Gene Information

Name : NIDE0858 (NIDE0858)
Accession : YP_003796550.1
Strain : Candidatus Nitrospira defluvii
Genome accession: NC_014355
Putative virulence/resistance : Virulence
Product : putative phosphate regulon transcriptional regulatory protein PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 826024 - 826740 bp
Length : 717 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10653699, 1454550, 3537313, 9878437; Product type pr : putative regulator

DNA sequence : 
ATGCCTCCCTCCTCAACGACACATAAAAAAATCCTGATCGTCGAAGATGAGAAGGATATTCTCCAACTCGTCAAGCTCTA
TCTGGAGAAGGAAGGGTTCCGCACCGTCTCCGCCATGACCGGCACAGAGGGGCTCCGCCAGGTCAAAGCCGAGCATCCCG
ACCTGATCATTCTCGACCTCATGTTGCCTGAGCTGGACGGGCTGGAAGTCTGCAAACGAATCCGGCTCAATCAAGAGACC
GCCCTGCTTCCCATTCTGATGCTGACCGCCAAAGCGGAGGAATCCGACACGGTCATCGGCCTCGAACTGGGCGCCGACGA
CTACGTCACCAAACCCTTCAGCCCCAAGGCGCTGGTGGCGCGCGTCAAGGCGCTTCTCCGACGGCTGGAACGGAACGCGA
ACAGCCCCCAGACGCAATATCACTACGGCCCCTTGACCGTGGATCTCTCGCGGCATGAAGTCCGGCTGGATGGACAGGAA
GTCGCGCTCACGGCCAAAGAGTTCGGCCTGCTGGAACACCTGCTGCGCAACATCGGGCGGGTGCTGACGCGCGACGTGCT
GCTCAGCGCCGTGTGGGGGTACGACTACTACGGCACCACCCGCACGGTCGATGTCCACGTGCGCCGGCTCAAACAAAAAC
TTCCGCTTCTGGACGACGCCATCATTTCGATCAAATCGCTCGGATACAAACTCCGCGAATCCGACGTACCTGCATGA

Protein sequence : 
MPPSSTTHKKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGLEVCKRIRLNQET
ALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRRLERNANSPQTQYHYGPLTVDLSRHEVRLDGQE
VALTAKEFGLLEHLLRNIGRVLTRDVLLSAVWGYDYYGTTRTVDVHVRRLKQKLPLLDDAIISIKSLGYKLRESDVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 9e-29 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_012469.1.7685629. Protein 4e-43 49
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB HE999704.1.gene2815. Protein 6e-38 48
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_002952.2859905.p0 Protein 7e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_002745.1124361.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_009782.5559369.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_002951.3237708.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_003923.1003749.p0 Protein 4e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_002758.1121668.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_009641.5332272.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_013450.8614421.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_007793.3914279.p0 Protein 5e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_007622.3794472.p0 Protein 7e-40 47
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB AM180355.1.gene1830. Protein 4e-32 44
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB HE999704.1.gene1528. Protein 8e-33 43
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB AF162694.1.orf4.gene Protein 1e-30 43
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB NC_012469.1.7686381. Protein 2e-36 42
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB AE000516.2.gene3505. Protein 7e-37 42
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB CP004022.1.gene1676. Protein 2e-27 41
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB AE016830.1.gene1681. Protein 6e-36 41
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB CP001485.1.gene721.p Protein 9e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB VFG1563 Protein 5e-29 41
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB VFG1702 Protein 2e-28 41
NIDE0858 YP_003796550.1 putative phosphate regulon transcriptional regulatory protein PhoB VFG1389 Protein 2e-25 41