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Name : NIDE4097 (NIDE4097) Accession : YP_003799691.1 Strain : Candidatus Nitrospira defluvii Genome accession: NC_014355 Putative virulence/resistance : Virulence Product : putative type IV pilus assembly protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4050131 - 4051798 bp Length : 1668 bp Strand : - Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 1588814, 1738317, 1944223, 1971619, 2677007, 7934814, 8423007, 8438237, 8820654, 9529113; Product type ps : putative structu DNA sequence : GTGCTCGCCACAGCCGAAGCCGCGCGAAAGCGGCTCGATGTGGCAACTGTGCTCATGGAGCGGTACCGGATACCGAAGCC GGCGCTCGGTGCCGCACTGGCGGAATTCTATCACTGCCCGTTTCTCGCCTATGACGAGCGCACGGTTCTGGAGCGGGAGT TATTCAAGAATCTCAGCCTGGACTATCTTCGGCTGAACCATTGGGTTCCGCTCAGGCGTCAAGGCAACGGAATCGAAGTC CTGATCGACGACCCGCACAATCCGGACAAGCTGTTCGATGTGCGCCGAGCGTTTCCGGGCCAGGCACTGTCCTATCGTGT CGGGCTCCGTTCCGATATTGAGCGATTGTTGAACGCCATTCAAGGGCGTGAATCCGGCGATGCGATATCCGACATTCTTG GCGAACTGGTCAGTGAAGCGCAGCTCGAAGAACAACAAAATGCAACGATTGCTGCGATCACCGAAAATGATTCGGCCATC GTCCGGCTCGCTAATCAGATCATCACCGACGCCTATCGGCGCGGGGCATCGGATATCCATATTGAGCCCTATGCCGATCG AAAGGAAACGGCTGTGCGCTTCCGCGTCGACGGCACCTGCTTTACGTACATGAAGATTCCGGCAGCCTACCGCCGGGCCG TCGTTTCGCGCCTGAAGATTATGGCGAGTCTGGACATTGCGGAGCGGCGCAAGCCGCAGGATGGCAAAATCCGGTTCAAG TTGGGTACCGGGCAGGAGATCGAATTGCGGGTCGCAACACTTCCCACTTCCGGCTTTAATGAAGACGTGGTGATTCGCCT GCTGACTGCCCACGGACCTCGCCGGTTGGAGGAGCTGGAGTTCACTGACGGAACACGCCGGCTCGTAGGGCAGTTGGCTC AAAAGCCGCATGGCATTGTCCTGTGCGCTGGTCCGACCGGATCAGGAAAGACCACCACTTTACATGCCATTCTGGCCTCG ATTAATACCGATGAGCGAAAGATCTGGACGGCGGAGGATCCGATCGAGATTACGCAAGATGGATTGCGGCAGGTGCAGGT TCATCCCAAGATCGGACTCACGTTTGCCACGACCATGAGGGCCTTCCTGAGAGCAGATCCGGACGTGATCATGATCGGGG AAATGCGCGACAAGGAGACGGCGGATATTGCCATTGAAGCCTCTCTGACCGGACACTTGGTGTTCAGTACCATCCATACC AATAGCGCCGTCGAAACTGTGGTGCGATTGCTCGATCTGGGGTGCGACCCGTTCAATTTTTCAGATGCCATGTTGGGAGT GTTGGCGATGCGGTTGTGCAAGCGCATCTGTCCCAACTGCCGCGAGACCTACCATCCCACGCGCAGCGAATATGACGAAC TCGTGCAGGCTTTTGGGGAGAGCGATTGGGAAGGCGTGCATCCTGCCTACAATCCGGGGCTCACACTGTTTCGTGGACGA GGGTGTGACACGTGTAACCAGACCGGGTACCGTGGACGAGTGCCCATCCATGAGTTGATGGTGGTGTCTGATTCCATGAA GGCACTGATTCAGTCCAGAGCGCGAACAGGGGAACTACTCACGCTCGCAAAAAGCGGCGGGATGAGGACGTTGGTGCAAG ACGGTATCGAGAAAGTACTGCAAGGACTCACCACGTATAAACAGGTGCGGGCAGTCGCGATCAAATAG Protein sequence : MLATAEAARKRLDVATVLMERYRIPKPALGAALAEFYHCPFLAYDERTVLERELFKNLSLDYLRLNHWVPLRRQGNGIEV LIDDPHNPDKLFDVRRAFPGQALSYRVGLRSDIERLLNAIQGRESGDAISDILGELVSEAQLEEQQNATIAAITENDSAI VRLANQIITDAYRRGASDIHIEPYADRKETAVRFRVDGTCFTYMKIPAAYRRAVVSRLKIMASLDIAERRKPQDGKIRFK LGTGQEIELRVATLPTSGFNEDVVIRLLTAHGPRRLEELEFTDGTRRLVGQLAQKPHGIVLCAGPTGSGKTTTLHAILAS INTDERKIWTAEDPIEITQDGLRQVQVHPKIGLTFATTMRAFLRADPDVIMIGEMRDKETADIAIEASLTGHLVFSTIHT NSAVETVVRLLDLGCDPFNFSDAMLGVLAMRLCKRICPNCRETYHPTRSEYDELVQAFGESDWEGVHPAYNPGLTLFRGR GCDTCNQTGYRGRVPIHELMVVSDSMKALIQSRARTGELLTLAKSGGMRTLVQDGIEKVLQGLTTYKQVRAVAIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-75 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-75 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NIDE4097 | YP_003799691.1 | putative type IV pilus assembly protein PilB | VFG0182 | Protein | 3e-82 | 45 |
| NIDE4097 | YP_003799691.1 | putative type IV pilus assembly protein PilB | VFG1876 | Protein | 6e-70 | 42 |
| NIDE4097 | YP_003799691.1 | putative type IV pilus assembly protein PilB | VFG2048 | Protein | 1e-75 | 41 |
| NIDE4097 | YP_003799691.1 | putative type IV pilus assembly protein PilB | VFG2426 | Protein | 7e-66 | 41 |
| NIDE4097 | YP_003799691.1 | putative type IV pilus assembly protein PilB | VFG0233 | Protein | 4e-69 | 41 |
