Gene Information

Name : ybbA (NIDE0350)
Accession : YP_003796055.1
Strain : Candidatus Nitrospira defluvii
Genome accession: NC_014355
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.-
Position : 310176 - 310880 bp
Length : 705 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 10783239, 11421269, 11844772, 11988180, 2126155, 2229036, 3762694, 8098033, 9640644, 9872322, 9873074; Product type e : enzyme

DNA sequence : 
ATGATTGCTACTCAGCATGTGACGATGCAACTGGCCGCAGGCGGTCAGCGGGTGACCATTCTTGACGATGTCACGATAGA
CATTCCGGAAAAGCAAACGGTGGCGATTATCGGGCCTTCCGGGAGCGGGAAGTCCACACTCTTGGGTCTGATTGCGGGGC
TCGACCGACCGACATCCGGAACCATTTGGTTGAACGGGGTCGAGATCACGGCGCTCACTGAGCAGGCGATGGCGCGGCTG
CGCTTGGCCAACGTCGGCTATATCTTTCAATCGTTTCATCTCATTCCAACGCTCACGGCTCTGGAAAATGTGTCGATCCC
GCTTGAACTCGCGGGTGACTCTCTGGCCTCCAAGCGAGCGGAGGAATTGCTGCACGCTGTCGGGTTGGGACATCGGATGT
CGCACTATCCGGTTCAGCTGTCGGGAGGAGAGCAACAGCGGGTCGCAGTGGCGCGTGCGTTTGCCTGTCGTCCGCCGATT
CTGCTGGCCGATGAGCCGACCGGCAATCTGGATTCCTCCACAGGCCAGCAAGTGATCGAACTGATCATGGCCTTGCACCG
TGATGCCGGGACTTCCCTGGTCTTGGTGACTCATGACCAGCACCTGGCGGCCTCCATGGAACGGGTGATTACGCTCCGCG
ACGGGCGAGTGGCGTCAGATCGACTCGCCTCACTTCACCAGAGGATGCCTGACCTGGAACCATGA

Protein sequence : 
MIATQHVTMQLAAGGQRVTILDDVTIDIPEKQTVAIIGPSGSGKSTLLGLIAGLDRPTSGTIWLNGVEITALTEQAMARL
RLANVGYIFQSFHLIPTLTALENVSIPLELAGDSLASKRAEELLHAVGLGHRMSHYPVQLSGGEQQRVAVARAFACRPPI
LLADEPTGNLDSSTGQQVIELIMALHRDAGTSLVLVTHDQHLAASMERVITLRDGRVASDRLASLHQRMPDLEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-36 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-36 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_003796055.1 ABC transporter ATPase NC_008702.1.4606598. Protein 2e-36 49
ybbA YP_003796055.1 ABC transporter ATPase NC_012469.1.7686878. Protein 2e-44 44
ybbA YP_003796055.1 ABC transporter ATPase CP001581.1.gene598.p Protein 1e-37 41