Gene Information

Name : capD2 (NIDE2683)
Accession : YP_003798314.1
Strain : Candidatus Nitrospira defluvii
Genome accession: NC_014355
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 2624229 - 2626271 bp
Length : 2043 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 16386381, 7961465, 9079898; Product type e : enzyme

DNA sequence : 
ATGTTGACACTGTCTCGATTCTCTAATCCGAAGTGCCTGCTCGTGCTGTTGGTGCACATCCTCCTGATGGGAATCGCCAA
CTATGCGGCGTTCTGGCTCCGCTTTGACGGAGATCTTCCGGATTGGGCGATGGACATCTTTCTGGGCACCCTCCCGATTC
TAGTCGCCGTGCGTCTCCTGATGTTCATTCCCTTCCGGCTGTACGGCACGGTCTGGCAGTACACCAGCCTCTGGGACCTC
GGCAATATCGTCGGCGCGACGTTGAGCGGCAGCATCGTGTTTTTTCTGGTGACACGGTATGGACTCGGGCAGACGGCGTA
TCCGCGGACGGTCTATCTGATCGATGCGTTGCTGTTGATCGTGCTTACCGGCGGGATGCGGGTCGCCCGGCGTGTCGGAT
ATCCTTCTTCATCCAATGGCGACATGAAGCGCGTGTTGATCTATGGCGCCGGCGATGCAGGAGAACGGCTGGTGCGCGAA
CTTCGACAGAACAAGGCCTTCGGGTATCAGCCGGTGGGCTTTATCGACGACAACCGGCGGAAGGCCGGCCAACGTATCCA
TGGCGTCAAGGTTTTGGGCACGCGAGCGCAACTTCCCGGCATCATGGAACGCGTCAAGCCCGACACCATTCTGATCGCCA
TGCCCAGCATCGGCGCCACGGCCACCAGGGAAATCGCCAAGGCGTTGTTGGCCTACAACGTGTCGATCAAGATTCTGCCC
GACCTCAGCGTGCTGTTGGACGGCAAGTCCGAGGTGAATCAGTTGCGCAATCTTTCAGTGGAGGACTTGCTGCACCGGCC
CCGTGTCGATTTGGATCGGTCCCTGACCGCTACGCTGTTGAAAGGAAAACGGGTGTTGGTGACAGGGGCGGGTGGCTCGA
TCGGGTCCGAGTTGTGTCGGCAGATCGCCTCCTACGCGCCGGAATGCCTCATCCTGTTCGAACGGTACGAGAACGGGTTG
TATGCCATCCACAGCGAGTTGGGTCCTCGCACGGCCCCGCCCCACATTTATCCGGTCATCGGCGATGTGACGGATGCAGA
TCGGCTTCGATCGACCATGGAGGCCTATCAGCCGCAGATCGTGTTTCATGCCGCCGCCCACAAGCATGTCCCCTTGATGG
AATACAACCCCTGCGAAGCGGTGAAGAACAACATCATCGGCACGCGCACCGTTGCCGCGTTGTCGGAAGAATTCGGTGTT
GAGCGGTTCATCATGATTTCGACCGACAAGGCCGTGCGTCCGTCCAGCGTCATGGGAGCGACGAAACGTGTGGCGGAACT
GATCATTCAAGACATGGCTCGGACCGGCAAGACCAACTTCATCACCGTGCGGTTCGGCAACGTGCTGGGCAGTAACGGCA
GCGTTGTGCCGCACTTTCTGCAGCAGATCAAACGAGGCGGACCGGTCACGGTCACCCACCCCGACGTGCAGCGGTATTTC
ATGTTGATTCCGGAAGCGGTCGAGCTGGTGTTGCAGGCTGCGTCGTTGGCGAATCCCGGCGCCGTCTACGTGCTGGAAAT
GGGGGAACAGGTCAGGTTGCAGGATCTGGCGCGGCACCTGATCCGGCTCTCGGGCTTTGTGCCGGAACAGGAGATTCCCA
TTTGTTTCACCGGCCTCCGTCCGGGAGAGAAACTGGCCGAGGAACTGGTGGGGCCGGATGAGACGGTCATGGCGTCGCCG
CTCAAGGAGATTTTGGCTGTTCGGTTGAACCAGGTTCCCCCACGGGAGGCGCTGCTGAGCGCGATCGCCGGGTTGGAGGA
AATGGCTTATCTGCAGAATGCGACCGAGGTGTTGGCCAGGATCGGTTCGTTGGTGCCGGCGTTCCAGCCCGCGCAACGCG
ATGCAGTCCTGGCGGTCGAACGAGACTGGTTCGGCACCGAAGGCGAGCAGCAATCCGCGGGCCACGAAACACGAGGTGGG
GCAGATGGTCACAAATTTTCTTCAGGGACTGTTCGGTTTTTTGCTCGTCGTCGGGTTCGGCGTGACGTCGGAGGCGGGGT
CGTTACCTCTCCCGCCGGAACCCTATCGGATCGGCCCGAATGA

Protein sequence : 
MLTLSRFSNPKCLLVLLVHILLMGIANYAAFWLRFDGDLPDWAMDIFLGTLPILVAVRLLMFIPFRLYGTVWQYTSLWDL
GNIVGATLSGSIVFFLVTRYGLGQTAYPRTVYLIDALLLIVLTGGMRVARRVGYPSSSNGDMKRVLIYGAGDAGERLVRE
LRQNKAFGYQPVGFIDDNRRKAGQRIHGVKVLGTRAQLPGIMERVKPDTILIAMPSIGATATREIAKALLAYNVSIKILP
DLSVLLDGKSEVNQLRNLSVEDLLHRPRVDLDRSLTATLLKGKRVLVTGAGGSIGSELCRQIASYAPECLILFERYENGL
YAIHSELGPRTAPPHIYPVIGDVTDADRLRSTMEAYQPQIVFHAAAHKHVPLMEYNPCEAVKNNIIGTRTVAALSEEFGV
ERFIMISTDKAVRPSSVMGATKRVAELIIQDMARTGKTNFITVRFGNVLGSNGSVVPHFLQQIKRGGPVTVTHPDVQRYF
MLIPEAVELVLQAASLANPGAVYVLEMGEQVRLQDLARHLIRLSGFVPEQEIPICFTGLRPGEKLAEELVGPDETVMASP
LKEILAVRLNQVPPREALLSAIAGLEEMAYLQNATEVLARIGSLVPAFQPAQRDAVLAVERDWFGTEGEQQSAGHETRGG
ADGHKFSSGTVRFFARRRVRRDVGGGVVTSPAGTLSDRPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-92 46
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-94 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capD2 YP_003798314.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-91 46
capD2 YP_003798314.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 1e-82 42