Gene Information

Name : NIDE2267 (NIDE2267)
Accession : YP_003797907.1
Strain : Candidatus Nitrospira defluvii
Genome accession: NC_014355
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2216919 - 2218334 bp
Length : 1416 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 10966457, 11489844, 16176121, 18076326, 2694934, 7699720, 8407777, 9738943; Product type pr : putative regulator

DNA sequence : 
ATGGAGCAGGAACGCATTCTTGTTGTAGATGATGACGAAGGATTGTTGCATCTGTTGAGGATGCGGCTGTCGGCGCTTGG
GTTTTCTGTGACGCCGTGCACCGGTGGTCGAGATGCGCTCACGGCTGCTCGGCAGGAAACGTTTGACATCGCGATTACTG
ACTTGAGGTTGCGAGCTGAAGATGGGTTGGCCTTGGCCGAGGAGCTCATGCAGATCCAGCCAGGTCTGCCAGTCATCATT
CTGACGGCTCACGGGAGCATTCCCAATGCTGTCGAAGCGATGCAACGCGGAGCGTTCGGCTACCTGACGAAACCGTTCGA
TGATAAAGAACTAAAGGCGACCCTCGACAAGGCCTTGATTCAGCTGCGCATGACGCGTGAGATTCAGCGCCTCAAATCTT
TAGTGAAGGAGCTGTACGGACTGGAGAACGTGATTGCCAGAAGTCCCGCAATGCAGCGATTGTTCCAGCAAGTTGCGCAG
ATTGCGGATTCAGATGCGACCATTCTGTTGACTGGAGAGACTGGTACCGGGAAAGAAGTGCTCGCGCGCGTACTTCATGC
CAATAGTCGTCGTTCTAAAGGTCCATTTGTGGCCTTGAATTGTGCGGCAATCAGCGAGACTCTCTTTGAAAGTGAATTGT
TCGGACATATTCGCGGCGCCTTCACCAATGCGGTAGCGGCCAAGCGGGGTCTCTTCCAAAGTGCACATGGGGGCACTCTC
TTTCTCGACGAGATTGCCGAGATGTCCTTACCCATGCAGGTGAAACTTCTACGTGCGGTGCAGGAGCGGGAAGTGCGGGA
GGTGGGGGCGGAGTACGCAACCAAGGTAGACGTGCGTATCATTACAGCAACGAACAAGGATCTCGCAGAAAGCGTAAAAG
CCGGAACCTTCCGTCATGACCTCTATTACCGAGTATCCGTCGTCCCTCTAGCTCTCCCTCCACTGCGAGAGCGAAAAGAC
GATATTCCGCTTCTTGCACAACATTTTTTAAAACAAAGCGCTAAACGTTCGAATAAGGATGTTCGTGGATTTACCCCTGC
AGCCATGCATCGCCTCATGGTGTATCCATGGCCGGGTAATGTGCGAGAGCTTGAAAATGCTGTCGAAAAAGCTGTCGTAA
TGTCTCGGCAAGATATGGTGTTGCCAGAATTGCTTCCGACGGCTGGGGCGACCTCAGACATTGGCCTAAAACCATTGACC
GAGGCCAAGGAGGATTTTGAGCGGACCTATTTGCGCAATGTGCTTCAGATGACAGGAGGGAATATCTCGCGCGCGGCACA
ATTTGCCGGCAGATATCGCGCAGATTTCTATAAAATGCTGAAAAAGTACGGGTTACACCCGTCCATGCTGAAAGAACGTT
CGGATTTTGAGTTGAGTGACTTAGAAGAAGTAACAGAGGAGGTCAAGGATGCCTAG

Protein sequence : 
MEQERILVVDDDEGLLHLLRMRLSALGFSVTPCTGGRDALTAARQETFDIAITDLRLRAEDGLALAEELMQIQPGLPVII
LTAHGSIPNAVEAMQRGAFGYLTKPFDDKELKATLDKALIQLRMTREIQRLKSLVKELYGLENVIARSPAMQRLFQQVAQ
IADSDATILLTGETGTGKEVLARVLHANSRRSKGPFVALNCAAISETLFESELFGHIRGAFTNAVAAKRGLFQSAHGGTL
FLDEIAEMSLPMQVKLLRAVQEREVREVGAEYATKVDVRIITATNKDLAESVKAGTFRHDLYYRVSVVPLALPPLRERKD
DIPLLAQHFLKQSAKRSNKDVRGFTPAAMHRLMVYPWPGNVRELENAVEKAVVMSRQDMVLPELLPTAGATSDIGLKPLT
EAKEDFERTYLRNVLQMTGGNISRAAQFAGRYRADFYKMLKKYGLHPSMLKERSDFELSDLEEVTEEVKDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-63 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-63 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIDE2267 YP_003797907.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 2e-87 47
NIDE2267 YP_003797907.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 7e-91 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIDE2267 YP_003797907.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 8e-66 42
NIDE2267 YP_003797907.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 1e-71 41