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Name : lysS (NIDE2053) Accession : YP_003797698.1 Strain : Candidatus Nitrospira defluvii Genome accession: NC_014355 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1971577 - 1973058 bp Length : 1482 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10913247, 1852601, 2053131, 2183178, 2203971, 7473706, 7576245, 7735833, 7773747, 7934813, 8274143; Product type e : enzyme DNA sequence : ATGGATGAACTGAACGATCAACGCCAACAACGCATCAAGAAACTCGACCACTTGCGGCAACTCGGGGTAGCTCCCTATGG CACGCGCTTCGAGGTGAAGGACCGGGCCGGACAACTCACGCGCCTGCACGGTGAAAAAACCAAGGAGGTGCTCGAGCAGG AGCAGATCAGCTGCACCATCGCCGGCCGCATCGTCGGACTACGCCGGTTCGGGAAAGCCGCCTTTGCCGTACTGCAAGAT GGGTCGGACCGTCTGCAGGTGTATCTGAAGAAGGACACATTGGGCGAGCAGGCTCACCAGATTTCCGAGGGACTGGATCT CGGCGACTGGATCGGAGTCACAGGTGTCTTGTTCCGCACCAAGACCAACGAATTTACCGTCGAAGTGAAAGTCCTCACGT TTCTGAGCAAAGCGCTCCGCCCGCTCCCGGAAAAGTGGCATGGGCTCACCGATGTCGAAACCCGGTACCGGCAGCGCTAC GTCGATCTCATTGCCAATCCCCAGGTTCACCAGATATTCGCCCTGCGCAGCCGCATCGTGTCCGGGATCCGCGCCTTTCT GATCGAACGCGGCTTCCTCGAAGTCGAAACGCCGATGATGCACCCGATTCCCGGCGGCGCCGCCGCAAAACCCTTCGTCA CCCATCACAATGCCCTGGGCGCCGAGCTCTATCTACGCATTGCCCCGGAACTCTATCTCAAGCGGCTGATCGTCGGCGGC TTCCCGCGCGTGTTCGAGATCAACCGGAATTTCCGGAACGAAGGCATCTCGACAATTCACAATCCCGAATTCACCATGCT GGAGTTTTACGTCTCCTACGCCGACTACCACGACTTGATCGTGCTGACCGAGGAACTCTTCGGCCGATTGGCCCAGGACA TTCTCGGCACCACCACGATCGACTATCAAGGCACACACATCAATCTCGGGTCGCCGTGGCGCCGATGGTCGTATCACCAA TCGATTCTGGAAGTGAATAGCCTGCCGCCGTCCGTCCTCACGAATCGCGATGAAGCCCTTGCGGCAGCCCAGCGCCTCGG TGTCGAAGTCTCTCCCAAAGAATCGCTGGTGAATATCCTCAACGAGATCTTCGAAGAGACCGTCGAGCCGCGCCTCCAAC AGCCGACCTTCATCACCGACTACCCGATCGAGATTTCCCCGCTCGCGCGAAGGAAAGACTCCGATCCGTCGCTCACCGAC CGGTTCGAGCTCTACATCGCGGGACGTGAAATCGCCAACGCCTTCTCCGAGTTGAACGATCCGCTCGATCAGCGCGAGCG CTTCGAGGCTCAGGCAGCGAAACATGCCGCCGGAGACGAGGAAGCCCACCGCGTCGATGAAGACTTCCTGCGCGCCCTCG AATACGGCATGCCGCCGACTGCGGGCGAAGGCATCGGCATCGATCGGCTGGTCATGCTCTTCACCAATCAGTCCTCGATC CGGGATGTGGTCCTCTTCCCGCAGCTGAGGCCTGAAAAGTAG Protein sequence : MDELNDQRQQRIKKLDHLRQLGVAPYGTRFEVKDRAGQLTRLHGEKTKEVLEQEQISCTIAGRIVGLRRFGKAAFAVLQD GSDRLQVYLKKDTLGEQAHQISEGLDLGDWIGVTGVLFRTKTNEFTVEVKVLTFLSKALRPLPEKWHGLTDVETRYRQRY VDLIANPQVHQIFALRSRIVSGIRAFLIERGFLEVETPMMHPIPGGAAAKPFVTHHNALGAELYLRIAPELYLKRLIVGG FPRVFEINRNFRNEGISTIHNPEFTMLEFYVSYADYHDLIVLTEELFGRLAQDILGTTTIDYQGTHINLGSPWRRWSYHQ SILEVNSLPPSVLTNRDEALAAAQRLGVEVSPKESLVNILNEIFEETVEPRLQQPTFITDYPIEISPLARRKDSDPSLTD RFELYIAGREIANAFSELNDPLDQRERFEAQAAKHAAGDEEAHRVDEDFLRALEYGMPPTAGEGIGIDRLVMLFTNQSSI RDVVLFPQLRPEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-120 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003797698.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-120 | 53 |
