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Name : clpV1 (NIDE1985) Accession : YP_003797634.1 Strain : Candidatus Nitrospira defluvii Genome accession: NC_014355 Putative virulence/resistance : Virulence Product : type VI secretion AtPase, ClpV1 family Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1897676 - 1900405 bp Length : 2730 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10982797, 11580258, 12624113, 12805357, 14567920, 14738756, 17201069, 2066329, 2185473, 8376377, 9927482, 19284603; Product type e : enzyme DNA sequence : ATGAATATCAATTTGAAAGGACTCATCGGCAAGCTCGATGACACCTGTCGTCGCGCGTTGGAGGGCGCGGCAGGGTTGTG TCTGAGCCGGACCCATTATGACGTGGATATCGAGCATCTCCTCAGTAAATTGCTCGAAATGTCGAATACGGATATCCACA AGATTTGTCACCACTACGAGATCGATCATTCGCGGTTCGCTCGAGACCTCACACGATCACTCGACCGCTTCAAGACCGGC AATGCGAGGACGCCGACCCTGGCGCCTCAGGTCCCGCGCCTCATCAATGAAGCCTGGTCATTGGCCTCCATTGAGTACGG AGTGAATCGTGTGCGGTCCGGCCACCTAATGCTGGCCTTGCTCGTCGAAGCCGATTTTGCCCGCATGATGCGCGAGCTGT CGCCCGAGACGCAGAAGATCTCAGCCGAAGATCTACACCGACGGTTGGGGGAGATCGTCTCGGGTTCAGCGGAGGATCTG GAAGATGTTCAGACGGGAGGCGTCGAGCAGCCGACGACGCAGGGGGCTCCTCATGCTTCCAGGACCCCGGCCCTTGATCA ATTCACCATCGATCTGACAGCGAGGGCCAAACAAGGGCAGATCGATCCGGTGCTGGGGCGGGATGCCGAGATCCGGCAGG TCGTGGATATCTTGACGCGCCGCCGGCAGAACAATCCCATTCTGACCGGAGAGGCCGGAGTGGGAAAAACCGCCGTCGTG GAAGGATTGGCGCTCAGAATCGTCACGGGCGATGTCCCCCCGCCGTTACAAAACGTCACCCTGCGGGTGCTCGACCTTGC GTTGCTCCAGGCCGGAGCGGGAGTAAAGGGGGAATTCGAAAATCGCCTCAAGTCGGTCATTAACGAAGTCAAAGCCTCCC CGAAACCTATTATTACCTTTATCGATGAGGCGCACACCTTGATCGGGGCGGGCGGAGCAGCGGGCCAGGGCGATGCCGCC AACATTCTCAAGCCGGCGCTGGCTCGGGGAGAGTTGCGGACGATTGCCGCCACCACCTGGGCCGAATACAAGAAATATTT CGAGAAAGATCCGGCACTCACCAGACGGTTTCAGGTGGTGAAGGTGGAAGAGCCGACCGAATCCGTCGCGATCAACATGA TGCGAGGATTAGCCGGGACGCTGGAAGAACATCACAAGGTGCGGTTGTTGGATGAGGCGATCGAGGCTGCGGTGAGACTG TCCCATCGATATATTTCCGGCCGGCAACTGCCGGACAAAGCCGTCAGCGTGCTGGACACCGCCTGTGCCCGAGTGGCCCT GGGACAGGTCGCAGAGCCGCCGGCGCTGGAAGACGCGCGCCGGCGAATCTCCCTCATCAATACCGAGGTCGACATTCTGG AGCGGGAGGCCATCACGGGTGGAAGTCATCAGGAGCGTCTGGCCGAATTGGGCAGGGAGAAAGTCGCAGAAGAACAGCGT CTGGCCGAGCTCAGGACCAGGTGGGAGCAGGAAAAAAAGGTGGTTGGAGAGATCGCAGGGATCCGGAAAAAGTTGGAACA GCATGCCGTGCCACCAAAGGCTCCGGACAAGCCAACCGACAAGGTTCCGGACAAGGCAACCAAAGCGCCTCCCGACAAGG CGATTGAAACGCCGCCCGCCAAGCTGACCCCTCAGGAAATCGAGACGTTGCAAACAGACTTGGCGAGGCTGAATAAAGAA CTGACCGTTCTCCAGGGAGAGACCCCGCTCCTGCAGCCCTGTGTGGACGGGCAGGCCATCGCTCAGGTGATCTCGGCCTG GACCGGCATTCCTATCGGACGGATGGTCAAAGACGAGATCAATACCGTGTTGACGCTCAAGGAGCATTTAGAAAAACGTG TGGTAGGACAATCGCATGCCCTGGATGCGCTGAGCCAACGCCTGCGAACGGCACGGGCAAAATTGGAGGATCCTCGCCGG CCGATCGGGGTGTTCATGTTTGTCGGACCAAGCGGGGTGGGGAAGACGGAAACGGGTCTGGCGCTCGCCGAGTTGCTGTT CGGCAGCGATCAAAACATCACCACCCTGAATATGTCCGAGTTCAAGGAAGAGCACAAAGTTTCGCTGTTGATGGGCTCAC CTCCGGGCTATGTGGGCTATGGCGAGGGAGGGGTCTTGACGGAAGCGGTACGCCGAAAACCGTATAGCGTGATCCTGCTG GACGAGATGGAAAAAGCCCATCCGGGTGTGCAGGACATTTTCTATCAGGTGTTCGACAAGGGCATGATGAAAGATGGCGA GGGGCGGGATATCGATTTCAAAAACACCGTGATCATCATGACCTCCAACGCGGGGACGGATACGTTCATGAAGCTCTGTG CCGATCCGGAGACCAGGCCTGATCCAGAGGCCCTAGCCGATGCGATTCGCCCTGATCTCTTGAAATACTTCAAGCCGGCC TTTCTGGGACGACTCATCGTGGTGCCATACTATCCGATTTCTCCCGATATCATGCGGCGCATCATCGAATTGCAGCTCAG CCGGGTCCGCAGCCGCATCAAGGAGAACCACCGTGCGGTGATGTCTTACGACGAAGCCCTGATCACGGCGATTGCGGACC GCTGCACCGAAGTGGAGAGCGGCGCGCGGAACGTGGATCACATTCTGACGCGGACGTTGTTGCCGGAACTCTCGACGGAA TTTCTTTCACGGATGGCAGCAGGGGAATTGGTCAACAAGGTCCATATCTCGGTCGAGCCTGGCGGGAACTTCCGTTACGA GGTGGCGTGA Protein sequence : MNINLKGLIGKLDDTCRRALEGAAGLCLSRTHYDVDIEHLLSKLLEMSNTDIHKICHHYEIDHSRFARDLTRSLDRFKTG NARTPTLAPQVPRLINEAWSLASIEYGVNRVRSGHLMLALLVEADFARMMRELSPETQKISAEDLHRRLGEIVSGSAEDL EDVQTGGVEQPTTQGAPHASRTPALDQFTIDLTARAKQGQIDPVLGRDAEIRQVVDILTRRRQNNPILTGEAGVGKTAVV EGLALRIVTGDVPPPLQNVTLRVLDLALLQAGAGVKGEFENRLKSVINEVKASPKPIITFIDEAHTLIGAGGAAGQGDAA NILKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPTESVAINMMRGLAGTLEEHHKVRLLDEAIEAAVRL SHRYISGRQLPDKAVSVLDTACARVALGQVAEPPALEDARRRISLINTEVDILEREAITGGSHQERLAELGREKVAEEQR LAELRTRWEQEKKVVGEIAGIRKKLEQHAVPPKAPDKPTDKVPDKATKAPPDKAIETPPAKLTPQEIETLQTDLARLNKE LTVLQGETPLLQPCVDGQAIAQVISAWTGIPIGRMVKDEINTVLTLKEHLEKRVVGQSHALDALSQRLRTARAKLEDPRR PIGVFMFVGPSGVGKTETGLALAELLFGSDQNITTLNMSEFKEEHKVSLLMGSPPGYVGYGEGGVLTEAVRRKPYSVILL DEMEKAHPGVQDIFYQVFDKGMMKDGEGRDIDFKNTVIIMTSNAGTDTFMKLCADPETRPDPEALADAIRPDLLKYFKPA FLGRLIVVPYYPISPDIMRRIIELQLSRVRSRIKENHRAVMSYDEALITAIADRCTEVESGARNVDHILTRTLLPELSTE FLSRMAAGELVNKVHISVEPGGNFRYEVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-167 | 44 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 8e-143 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-142 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpV1 | YP_003797634.1 | type VI secretion AtPase, ClpV1 family | VFG2076 | Protein | 0.0 | 52 |
| clpV1 | YP_003797634.1 | type VI secretion AtPase, ClpV1 family | VFG2084 | Protein | 2e-155 | 44 |
