Gene Information

Name : LCAZH_2681 (LCAZH_2681)
Accession : YP_003789717.1
Strain : Lactobacillus casei Zhang
Genome accession: NC_014334
Putative virulence/resistance : Virulence
Product : OmpR family DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2623076 - 2623777 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence : 
TTGAAATCAACATTGCTTCTAGTGGAAGACGAAGCTGCATTGGCAGATTCATTAACAACAGAGTTCGAGTTAGAGAATAT
GTCAGTTATTTGGGCAAAAGACGGCGCGGAGGCATTGACGCTGTTTAAGAACAATGAAGGTAAAATCAATGTCATTATTT
TGGATTGGATGCTGCCTAAACTAGACGGGTTTAGTGTTTTGCGGAAAATCAGACAATCCAGCCAAGTGCCTATTATTATG
TTGACGGCTCGTGACTACATCGGCGACAAGGTGGCTGGACTGACTGGCGGGGCCGATGATTACATCACCAAGCCTTTTGA
AATGGAGGAACTGGTTGCTCGTGTCGAAGTCGCCTTGCGTCACAATCGGCAGGCTGTCTCACCAGCGACTATTTTTCAAG
TCGATGATCTGCTGGTGGATACGGATAACAAACGCGTTCAGCGCGGTGAGGTGATTATGCCATTGACACAGCGCGAATAT
GAGTTGCTTGTCGAACTTGTTGCCCATCAGGACGAAGCTTGTTCGAGGGATGACTTGCTTGATGCCGTCTGGGGAACCGA
CTTTGACGGTCAACCTAATATATTGGATGTCTATATCAGAAACTTACGTCATAAAATTGATGATCATTCAGGTAGCAAGA
AACTCATTCATACTGTTCGCGGCGTCGGCTATATGCTCTCGGCTAATGTTGCATCCATTTAG

Protein sequence : 
MKSTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGFSVLRKIRQSSQVPIIM
LTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREY
ELLVELVAHQDEACSRDDLLDAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANVASI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator HE999704.1.gene1528. Protein 2e-32 47
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0083 Protein 2e-30 45
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0111 Protein 3e-30 44
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0638 Protein 7e-24 44
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0308 Protein 4e-28 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_007622.3794948.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_003923.1003417.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_013450.8614146.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_002951.3238224.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_007793.3914065.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_002758.1121390.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_010079.5776364.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_002952.2859858.p0 Protein 6e-30 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator NC_012469.1.7685629. Protein 5e-31 42
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0197 Protein 3e-31 42
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator BAC0125 Protein 4e-31 42
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator AE015929.1.gene1106. Protein 6e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator VFG0596 Protein 3e-31 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator VFG1389 Protein 3e-34 43
LCAZH_2681 YP_003789717.1 OmpR family DNA-binding response regulator VFG1390 Protein 2e-34 41