Gene Information

Name : LCAZH_2388 (LCAZH_2388)
Accession : YP_003789445.1
Strain : Lactobacillus casei Zhang
Genome accession: NC_014334
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2344693 - 2345589 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence : 
ATGACATCAATAATGGAATTCTTTACCGCTTTGGGAAAATATGATTTCCTGCAAAGCGCGTTGATCACCGCCATCATGGT
TGGTATCATGTCAGGCTTGATCGGAAGTTTCATCATTTTACGCGGCATGTCGCTGATGGGGGATGCGATTTCCCATGCGG
TCCTGCCCGGGGTAGCCGTTGCTTATATGCTCGGTATTAACGTCATGATCGGGGCATCGGTTTTCGGAATTATTGCGGCT
TTGCTGATCGGGTTTGTGGCAGCCAACAGTAAAATCAAAACCGACACATCTATCGGGGTCGTGTTCAGTGCATTCTATGC
CTTGGGTTTTATTCTGATTTCAATGGCTGAAAGTGCGACTAACTTGCACCATATTCTGTTCGGTAACATTTTAGCCGTCA
GCGACAGCGACATTGTCACCACCGCTGTCGTGTTGGGAATTGTGATCCTGTTCGTGGTTCTGTTCTATAAGGAACTGCTG
ATCACCTCGTTTGATAATACGTTTGCGAAAACGTATGGCTTGAATACCACCATGATTCACTATGCTTTGATGCTGGTGTT
GACGCTTGTCACCGTTTCAGCCTTGCAGACAGTTGGGATCATTCTAGTTGTGGCGATGCTGATTACGCCAGCAGCAACTG
CCTTCTTGTGGACGGATCGGTTAGAAACGATGTTGATCACGTCCGCTAGCGTAGGCGTTTTCTCGGCCATCACCGGACTT
TACTTCAGTTTCACCTTTAACTGGGCATCCGGGCCGGCCATTGTGCTCGTAGCTGCGGTCCTGTTCGCCATTTCCTTCGT
CTTCTCACCGAAGCAGGCGTTCTTCAGTTTTAGTAAAAAACAGCGAGAAAAGAAAACCGCTGCTGCTACCCACACTGCCG
AGGAGGCTGTTCGATGA

Protein sequence : 
MTSIMEFFTALGKYDFLQSALITAIMVGIMSGLIGSFIILRGMSLMGDAISHAVLPGVAVAYMLGINVMIGASVFGIIAA
LLIGFVAANSKIKTDTSIGVVFSAFYALGFILISMAESATNLHHILFGNILAVSDSDIVTTAVVLGIVILFVVLFYKELL
ITSFDNTFAKTYGLNTTMIHYALMLVLTLVTVSALQTVGIILVVAMLITPAATAFLWTDRLETMLITSASVGVFSAITGL
YFSFTFNWASGPAIVLVAAVLFAISFVFSPKQAFFSFSKKQREKKTAAATHTAEEAVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-57 59
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-57 59
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-40 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-40 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-40 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-40 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCAZH_2388 YP_003789445.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 2e-40 43
LCAZH_2388 YP_003789445.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCAZH_2388 YP_003789445.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 2e-40 43