Gene Information

Name : LCAZH_1928 (LCAZH_1928)
Accession : YP_003788991.1
Strain : Lactobacillus casei Zhang
Genome accession: NC_014334
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1881390 - 1882148 bp
Length : 759 bp
Strand : -
Note : -

DNA sequence :

ATGGACAAGCAACCTGTCGTAACTGTTGACAACGTTACGAAAACCTATGGTAAAAAAGGGGAAAAACAAACACCCGCATT
GAAAGGTGTCAGTTTCGAAGTACAACCCGGTGAATTCGTCGGCATCATGGGCGCATCAGGTTCAGGGAAAACGACCTTGC
TCAATATCCTTAGTACGTTAGATACACCGACTTCTGGCTCCGTTTTGATCAAAGGTGCTGACGTCACAAAATTAAAAGGG
GATGCCTTATCAGATTTTCGAGCTAAAAAAATCGGTTTCATTTTCCAAGATTTTAATTTGTTGGAGAACCTAACTGGCCG
CGAAAATATTGCCCTACCGCTGACGTTGCAAAATGTGAGTGCGAAGAAGCAGGCGGCGGCTGTTGATAGCATTGCCCAAA
CATTAGGAATCAATGAAGTGCTCGACCACTATCCAACGGAGTTATCTGGTGGTCAAAAACAACGAGTTGCCGCTGCCCGG
GCGTTGGTGCAGAAGCCAGATATCCTGTTCGGGGATGAGCCGACGGGTGCTTTGGATTCCAAGTCAGCCCGTGAGTTATT
GGATACCATGGAACAGTTGAATAAGAAACAGGATGTCTCTATCTTGTTGGTCACCCATGATCCGTTTTCGGCTAGTTATG
CCAGCCGTATTTTGTTCATTAAAGATGGGCAAATCGGTTCCGAGCTGGTCCATGGTGATAAGAGTCAGGAAGCCTTCTAT
CAGGAGATTCTTGACACACTCGGCACATTTCAAAAGTAA

Protein sequence :

MDKQPVVTVDNVTKTYGKKGEKQTPALKGVSFEVQPGEFVGIMGASGSGKTTLLNILSTLDTPTSGSVLIKGADVTKLKG
DALSDFRAKKIGFIFQDFNLLENLTGRENIALPLTLQNVSAKKQAAAVDSIAQTLGINEVLDHYPTELSGGQKQRVAAAR
ALVQKPDILFGDEPTGALDSKSARELLDTMEQLNKKQDVSILLVTHDPFSASYASRILFIKDGQIGSELVHGDKSQEAFY
QEILDTLGTFQK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-35	44
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-37	41
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	5e-37	41
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-37	41

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
LCAZH_1928	YP_003788991.1	antimicrobial peptide ABC transporter ATPase	CP001581.1.gene798.p	Protein	4e-39	43
LCAZH_1928	YP_003788991.1	antimicrobial peptide ABC transporter ATPase	NC_012469.1.7686878.	Protein	8e-44	42
LCAZH_1928	YP_003788991.1	antimicrobial peptide ABC transporter ATPase	CP001581.1.gene598.p	Protein	4e-39	42
LCAZH_1928	YP_003788991.1	antimicrobial peptide ABC transporter ATPase	NC_008702.1.4606598.	Protein	4e-36	42