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Name : lysS (BP951000_2337) Accession : YP_003786810.1 Strain : Brachyspira pilosicoli 95/1000 Genome accession: NC_014330 Putative virulence/resistance : Virulence Product : lysyl-tRNA-synthetase LysU class II Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2582823 - 2584355 bp Length : 1533 bp Strand : + Note : - DNA sequence : ATGTCAGAAAATCAAAATAATTCTGAAAATACACAAAATGAAAAAAATAGCAGTGTAGAAAAAAATGCAGAAAAAGAAAA CAGAAAAGAGAAATTAAACACATTAAGAAATATGGGAATTAATCCATTTCCAAATAGTTATGATGTAACTTATAAATCAA AGGATATAGCAGAGCAATTTGAAGAACTTGAAAAGAATGAAACAGAAGTTGCTGTTGCTGGAAGAATAATGCTTTATAGG GTAATGGGTAAATCTTCATTTTTAACTATAAAAGATTCTAAAGGCACTATTCAAGCATATATACAAAAAGATAAACTTGG TGATGAGTTTTATAATACAGTATTCAAAAAGCTTATAGATATAGGTGATATTGTAGGAGTAAAAGGAACTGTATTTAAAA CTAAAACAGGTGAAATTACAATATATGCAAGCGAATTAAAACTTCTTACAAAATCATTAAATCCGCTTCCTGAAAAATTT CATGGTTTAACAGATACAGAGCTTCGCTACAGACAAAGATATGTTGATTTAATAATGAATGATGATGTTAAAGAGGCTTT TATTAAACGCTCTAAAATGATATCTGCTATAAGAGAAATAATGATAGAGAATAATTTTCTTGAAGTAGAAACTCCTATGA TGCATCCATTAATTGGAGGAGCTAAGGCAAAACCATTTGTTACGCATCATAATACTTTAGATATGACACTTTATTTAAGA ATAGCACCTGAACTTTATTTGAAAAGACTTATAGTTGGCGGTTTTGATAAAGTATTTGAGCTTAATAGAAATTTCCGTAA TGAAGGTATATCTACAAGACATAATCCAGAGTTTACTATGATGGAAGCATATATGGCTTATGCTAATTTCCACAAGGTTA TGGAATTGGTAGAAGAGGTGTTCTCTAAAGTATGTTTCAAATTAAATGGAAAATACACTTCTCAGTATAAAGATTATGAG ATTAACTTTAAGCCTCCATTTGCAAGAGTACCTATGGTTGATTTAGTTAAAGAGCATTCTGGACTTGACTTTAATTCTAT ACAATCAGATGATGAAGCTATATCAAAAGCAAAATCAATAGGTGTAGAGATAGATACTTCAAAAGGTAAGCCTACTAAAT GGGAAGTTATGGTTGCTGTATTTGAAGAGAAAGTTGAAGAGAAGCTTATTCAGCCTACATTTGTTATTAATTATCCTAAA GCAGTTTCTCCGCTTTCAAAATCTTATCCTGATAATCCAGACATTACAGAGAGATACGAACTCTTTATTGGCGGAATGGA GATGTCTAATGGATTCAGTGAACTTAATGACCCAATAGACCAAAAAGAGCGTTTTGAGGAACAGTTAAAAGCAAAAGCTC GCGGTGAAGATGAGACTATGGATATGGATTTAGATTTTATTAATGCATTAGAATATGGGCTTCCTCCTACTGGTGGGCTT GGAATAGGAATTGATAGAATGGCTATACTTTTCTTAAATGTGCCTAGTATTAGAGACACTATTCTTTTCCCGCAGATGAG AAAGTTAGAGTAG Protein sequence : MSENQNNSENTQNEKNSSVEKNAEKENRKEKLNTLRNMGINPFPNSYDVTYKSKDIAEQFEELEKNETEVAVAGRIMLYR VMGKSSFLTIKDSKGTIQAYIQKDKLGDEFYNTVFKKLIDIGDIVGVKGTVFKTKTGEITIYASELKLLTKSLNPLPEKF HGLTDTELRYRQRYVDLIMNDDVKEAFIKRSKMISAIREIMIENNFLEVETPMMHPLIGGAKAKPFVTHHNTLDMTLYLR IAPELYLKRLIVGGFDKVFELNRNFRNEGISTRHNPEFTMMEAYMAYANFHKVMELVEEVFSKVCFKLNGKYTSQYKDYE INFKPPFARVPMVDLVKEHSGLDFNSIQSDDEAISKAKSIGVEIDTSKGKPTKWEVMVAVFEEKVEEKLIQPTFVINYPK AVSPLSKSYPDNPDITERYELFIGGMEMSNGFSELNDPIDQKERFEEQLKAKARGEDETMDMDLDFINALEYGLPPTGGL GIGIDRMAILFLNVPSIRDTILFPQMRKLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-109 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003786810.1 | lysyl-tRNA-synthetase LysU class II | VFG1668 | Protein | 2e-109 | 51 |
