Gene Information

Name : cpfrc_02053 (cpfrc_02053)
Accession : YP_003784453.1
Strain : Corynebacterium pseudotuberculosis FRC41
Genome accession: NC_014329
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2271330 - 2272013 bp
Length : 684 bp
Strand : -
Note : ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGATTCCCGTTCTCTCTCTTGAAAAAGCCAGTGTTGTTTATCCCGATGGTTCGTCTACGGTTACGGCATTGGATGCCGT
TGACCTGGAAGTTCGTTCTGGGGAGTTGCTTGCGTTGGTAGGCGAATCCGGCTCCGGTAAGTCCACGTTGCTGTCTGTGG
CGGGGGCACTCCAAACTCCGACTTCGGGCACGGTAATGGTTGCAGGGCAAGATATTCAAACCTTGGATGATGCCGGTCGT
GCCAAGTTGCGTCGTGAGAAGATCGGTTTTGTTTTCCAGCAGGCAAACCTTCTTGGTTCTCTCAATGCTCGGGAGCAGCT
TTTGGTCACGGATCACGTACGCGGTATACGCGGCTCAAAGCTACGGGCTCGTTATGATCGTGCTGATGAGCTGCTGGCGC
GCGTGGGCCTTGAAGGCAAGGAAAACCGTAAGATTGCGCAGCTTTCTGGTGGTCAGCGGCAACGTGTGAATATTGCACGT
GCTCTCATGGGGAATCCTGCACTCTTGCTCGCCGATGAGCCTACCTCCGCATTGGACCGCCGCATGAGCGTGGAAATTGT
GTCTTTGCTTTCTGAGATCACTAAGGAGTTTGATGTGGCCACGGTGATGGTGACCCACGATTTGAGCCAGCTTTCTTATG
CCGACAACGTTGTGGAGCTTATCGACGGCGCCCGTAAAGACTAA

Protein sequence : 
MIPVLSLEKASVVYPDGSSTVTALDAVDLEVRSGELLALVGESGSGKSTLLSVAGALQTPTSGTVMVAGQDIQTLDDAGR
AKLRREKIGFVFQQANLLGSLNAREQLLVTDHVRGIRGSKLRARYDRADELLARVGLEGKENRKIAQLSGGQRQRVNIAR
ALMGNPALLLADEPTSALDRRMSVEIVSLLSEITKEFDVATVMVTHDLSQLSYADNVVELIDGARKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-29 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cpfrc_02053 YP_003784453.1 hypothetical protein NC_008702.1.4606598. Protein 2e-26 44
cpfrc_02053 YP_003784453.1 hypothetical protein CP001581.1.gene798.p Protein 2e-34 41
cpfrc_02053 YP_003784453.1 hypothetical protein NC_012469.1.7686878. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cpfrc_02053 YP_003784453.1 hypothetical protein VFG2059 Protein 6e-17 41