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Name : capD (CLJU_c34180) Accession : YP_003781565.1 Strain : Clostridium ljungdahlii ATCC 49587 Genome accession: NC_014328 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3735080 - 3736918 bp Length : 1839 bp Strand : - Note : - DNA sequence : ATGCAAAAAGACAAAAAACTCATAGTATACGATATATTATTTCTTATAGGTTCCTTATATTTTGCCTTATTACTTAAATT TGATTTTAATATACAGCAGGAATATATAATATTTTTAAAAATTTCAGTTATTCCTATGGTAATTATAACTTTAGTATTTA ACAAAGTTTTTAATTTATACGATAGTATATGGAAATATGCATCAGTAGAAGAGTTAATTTCTATTGTATATTCTGTTTCT GTATCCAATATTATATTTGTAATTTACAGCTATTTTATAAATTATAAATTTCTTGAAAATAGGTATTATAGATTTCCATA TACTGTACATATAATTTTTTGGATATTATCTGTGCTAACCTTAGGCGGTATAAGATTTATATACAGGTTACTTCAAGATA AAAGCGTAGGACAATATAAAAAGATAAGAAATAAAAGACTTCTTATAATTGGTGCAGGAGATGCATCGGCAGTGCTCATA AAAGAGATAAAGAAAAATAGAAATTTTAATTATGATGTAGTTGGACTTGTAGATGATGATGAAACAAAAAGAAAAAAGTT GATAAATGGTATAAAAGTTTTAGGAGGAAGAGATGACATACCAAGAATATGCAAAGAAAGAAGCATAGAAGAAATAATAA TTGCAATGCCTTCTGCAGATATCAAGACTAAAAGGGAAATCATAAATATATGCAAGAGTACAAAATGCAAGCTTAAAACT TTGCCTGGCATATATGAAATGATAGATGGAAATTTAAATATGAGCAAATTAAGAGATGTAAACATAGAAGATCTTCTTGG AAGAGATGAAGTTAAGCTTAACAATGAAAATATAAATAAGTACATAAAGGATAAGATTATAATGGTCACAGGTGGTGGAG GATCTATAGGATCTGAATTATGCAGACAGATAGCTAGATTTGGTCCAAAGCAACTTTTGATACTAGACATATATGAAAAT AACGTTTATGACGTGCAGATGGAATTAAACTATAATTATTCAAAATTAAATAAAGCCATAATTATAGCTTCTATAAGAGA TGAAGATAGATTAAGAAGTATATTTGATAAATACAGACCAGAAGTGGTTTTTCATGCAGCTGCTCATAAGCACGTTCCAC TTATGGAAGGTAATCCGGCAGAAGCCGTGAAGAATAATATAATTGGTACCTATAATGTACTAAAATGTTGTGATGAATTT AAAGTGAATAAGTTTGTTCAAATAAGTACGGATAAGGCAGTTAATCCAACTAATGTTATGGGAGCTTCAAAGAGATTTTG TGAAATTATGGTGCAGGCTTTTGACGAAGTTAGTGAGACGGAGTATGTAGCTGTAAGATTCGGAAATGTTTTAGGGAGTA ATGGTTCGGTAATTCCACTTTTTAAAAAGCAAATAGCCCATGGGGGACCTGTTACGGTAACCCATCCTGAAATAAATAGA TTTTTTATGACGATACCTGAAGCAGCACAGCTTGTAATTCAGGCAGGTGCCATAGCCCATGGTGGAGAAATTTTTGTACT TGATATGGGAAAACCCGTAAAAATAGTAGATCTGGCCAAGGATCTTATAACTTTATCTGGATATGAACCTGATGTGGATA TAAAAATAGAATATACAGGTTTAAGACCGGGAGAGAAATTATATGAGGAACTTCTTATGAATGAAGTAGCTTTAACTTCC ACAGAACATGATAAGATATTTGTTGAAAAACCAGCTAAAATAGATATGACTTTTGTAGAGGAGTCTATAAAACAGTTTAG AGAAGTGGTAAATGAAGATAAAGAGGAAATAATCAAACTTATAGAGGAAAAAGTACCAACCTATAAGAGAAAAAAATAG Protein sequence : MQKDKKLIVYDILFLIGSLYFALLLKFDFNIQQEYIIFLKISVIPMVIITLVFNKVFNLYDSIWKYASVEELISIVYSVS VSNIIFVIYSYFINYKFLENRYYRFPYTVHIIFWILSVLTLGGIRFIYRLLQDKSVGQYKKIRNKRLLIIGAGDASAVLI KEIKKNRNFNYDVVGLVDDDETKRKKLINGIKVLGGRDDIPRICKERSIEEIIIAMPSADIKTKREIINICKSTKCKLKT LPGIYEMIDGNLNMSKLRDVNIEDLLGRDEVKLNNENINKYIKDKIIMVTGGGGSIGSELCRQIARFGPKQLLILDIYEN NVYDVQMELNYNYSKLNKAIIIASIRDEDRLRSIFDKYRPEVVFHAAAHKHVPLMEGNPAEAVKNNIIGTYNVLKCCDEF KVNKFVQISTDKAVNPTNVMGASKRFCEIMVQAFDEVSETEYVAVRFGNVLGSNGSVIPLFKKQIAHGGPVTVTHPEINR FFMTIPEAAQLVIQAGAIAHGGEIFVLDMGKPVKIVDLAKDLITLSGYEPDVDIKIEYTGLRPGEKLYEELLMNEVALTS TEHDKIFVEKPAKIDMTFVEESIKQFREVVNEDKEEIIKLIEEKVPTYKRKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-102 | 48 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-100 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_003781565.1 | capsular polysaccharide biosynthesis protein | VFG1300 | Protein | 3e-98 | 46 |
