Gene Information

Name : Hsero_0949 (Hsero_0949)
Accession : YP_003774374.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : sigma-54 dependent transcription regulator protein
Function : -
COG functional category : K : Transcription
COG ID : COG3829
EC number : -
Position : 1040618 - 1041760 bp
Length : 1143 bp
Strand : -
Note : -

DNA sequence : 
ATGCACGCCAGCCATCGCTCTGCCCATCTGTATGCGCTGCCCTCCTCGCCGGAGGGTCACGGCGATCTTGCAGCGCGCGC
GTCGCCACCGCTGCTGACCTTGCCCCATGCGCGCAAGCTGGGCACGTCCATCCGCGCCACTGCGCAGGTATTCCATGATC
CGGTTTCGCTGGCCTTGCTGGAACGCGTGCAGCGCGTGGCTCCCAGCGACGCCAACGTGGTCATCATCGGCGCTACCGGC
ACCGGCAAGGAATTGATTGCGCGCCACGTGCACGAGCTGAGCCAGCGGCGGGATGCGCCTTTCGTGGCGGTGAACTGCGG
CGCGTTTTCGGAGAGCCTGGCCGAGAGTGAGTTGTTCGGCCATGAGAAAGGCGCATTCACCGGCGCCATCACCCACAAGC
CGGGCTGGTTCGAGGCTGCCAATGGCGGCACCCTGTTCCTCGATGAAATCGGCGACCTGCCGCTGGCCATCCAGGTCAAG
CTGTTGCGGGTGCTGCAGGAACGCGAAGTGGTGCGGCTGGGCTCACGGCGCAGCATCCCCATCGATGTGCGCATCATTGC
GGCCACCAACGTGCGCCTGCAGGATGCGGTGGCGGCCGGGCATTTCCGCCAGGACCTGTACTATCGGCTGCAGGTGGTGC
AGCTGGCCATTCCACGCTTGCGTGAGCGGCCTCTGGACATCCTGCCGCTGGCCTATCACTTCCTGCATGAATATCGCCAG
CGCCTGGGCTATGGCGCGGCCCGCATCGATGGCGAGGGCGAACGCAAGCTGCGCCAGCATGACTGGCCGGGCAATATCCG
CGAACTGGAAAACGCCATCCACCATGCGCTGCTGATCTGCCAGGATGACTGCCTGCGCGCCGAACACTTCCATCTCTCGC
ATGTGGAGCGGCGGCTGGACTACGCAGTTGCCGCCGCCGACGAGCGCGGCAATGATCCCCTGCACGCCCTGGAACAAGCC
TTGCAAGGTCTGTTCAACCAGTCGCAGGAGGGCCTGTTCGAGAAGATCGAGGACACCGTCTTTCGCACCGCCTTCGAATT
CTGCGAACGCAACCAGGTGCAGGCCGCGCGCCTGCTCGACATCAGCCGCAACGTGCTGCGGGCGCGGCTGATCCGTAACG
GTCAGATCTCGGCGCTGAAATAG

Protein sequence : 
MHASHRSAHLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATG
TGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVK
LLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQ
RLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADERGNDPLHALEQA
LQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 1e-42 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 1e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_0949 YP_003774374.1 sigma-54 dependent transcription regulator protein BAC0467 Protein 3e-54 44