Gene Information

Name : hrcR (Hsero_0794)
Accession : YP_003774221.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : type III secretion HrcR transmembrane protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 873534 - 874196 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGAGCGGGCAGTTCGATGTCGTTTCATTCTCGGTGCTGCTGGCGCTCATGGCGCTGGTGCCGCTGATGGTGGTGAC
GACCACTTCCTTTCTCAAGATCTCATTGGTGCTGCTGGTGCTGCGCAACGCCATCGGCGTGCAACAGGTGCCGCCGACGC
TGGCCATCTACGGCATCGCCCTGGCCTTGTCGGTATTCATCATGGCGCCCACTGTGCAGGAGGTGGGCAAGCGCGCCATG
GCGGTGGACGTGTCCCATCCGGCGGCCTCGCGCACCGTGCCCATCCTGGAGCGCGCCCAGGATGCCTTCGATCCGCTGCG
CAAGTTCATGCTCAAGATGAGCCATGCCGAGCAGCGCGAGATGTTCCTGGCCTCGGCCAAGAAGCTCTGGCCCAAGGAAG
CGGCCAAGGATGCCCAGCCCACCGATGCGCTGATCCTGATCCCGGCCTTTGTGGTCTCTGAATTGCAGACCGGGTATGAG
ATCGGCTTTCTGATCTATATCCCCTTCGTGGTGATCGATCTGCTGATCTCGAATCTGCTCATGGCGCTGGGCATGCAACA
GGTGAGCCCGCAGACCATCACCATTCCGCTCAAGCTGTTGCTCTTCACGCTGGTAGGCGGATGGGCCAAGCTGCTCAACG
CGCTGGCCATGTCGTATGTCTGA

Protein sequence : 
MLSGQFDVVSFSVLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQEVGKRAM
AVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALILIPAFVVSELQTGYE
IGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVGGWAKLLNALAMSYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-46 52
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-46 52
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-46 52
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-42 52
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-42 52
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-41 52
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-41 52
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 8e-41 51
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-46 51
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 8e-41 51
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-38 47
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-38 47
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-38 47
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-38 47
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-38 47
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-39 46
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-39 46
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-39 46
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 46
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-43 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-39 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-39 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-39 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-39 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-36 44
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-39 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-32 43
escR AAK26700.1 EscR Virulence LEE Protein 8e-33 43
escR AAL57527.1 EscR Virulence LEE Protein 8e-33 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-33 43
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-33 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-32 43
escR AAC31528.1 L0049 Virulence LEE Protein 9e-33 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-33 42
escR AAC38369.1 EscR Virulence LEE Protein 9e-32 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-32 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-32 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-32 42
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-33 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-32 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0044 Protein 3e-48 48
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0519 Protein 2e-38 47
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0394 Protein 2e-39 45
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0188 Protein 4e-40 45
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0827 Protein 4e-33 42
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG0715 Protein 5e-32 42
hrcR YP_003774221.1 type III secretion HrcR transmembrane protein VFG2338 Protein 3e-27 41