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Name : hrcV (Hsero_0786) Accession : YP_003774213.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : type III secretion HrcV transmembrane protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 864941 - 867028 bp Length : 2088 bp Strand : + Note : - DNA sequence : ATGAAAGCCATGGGCATCGTGATGCTGCTCAACAAATTCGCCATCCAGCTCGGCAAGCGCGCCGAATTGCTGGCGGCGGC GCTGGTCATCGGCATCGTCTTCATGCTGGTGCTGCCCATGCCGATCTGGCTGCTCGACATCCTCATCGCAATGAGCCTGT GCGCTTCCGGGCTGATCGTGGTGGTGGCCATGTACATGGCCGGGCCGACCGCCTTTTCGACCTTTCCGGCGGTGCTGCTG CTGACCACCTTGTTCCGTCTGGCGATCTCGGTGTCGACCACGCGCCTGATCCTGCTGGAAGCCGACGCCGGTCACATCGT CGAGACCTTCGGCAACTTCGTCGTCGGCGGCAACCTGGTGGTGGGGCTGGTGATCTTCCTGATCCTGACGGTGGTGCAAT TCATCGTCATCACCAAGGGCTCGGAACGGGTGTCGGAAGTGTCGGCGCGTTTTTCCCTGGACGCCATGCCGGGCAAGCAG ATGTCCATCGACAGCGACTTGCGCGCCGGCATCCTCACGCCCGAGGAAGCCAAGGCCAAGCGCGCCCACCTGGGCCAGGA AAGCCAGCTGCACGGCGCCATGGACGGCGCCATGAAGTTCGTCAAGGGCGACGCCATCGCCGGCATCTGCATCGTCGCCA TCAACCTGATCGGCGGCATCTCGATCGGCATCATCCAGCGCGGCATGGATGCCGGCCAGGCCATGCAGGTCTATTCCATC CTCTCCATCGGCGATGCGCTGATCGCCCAGATCCCGGCGCTGCTGATCTCGCTGGGGGCCGGCATCATCACCACCCGCGT CAGCGATGATAACGAAGAGGGTGAAACCAACATCGGCCGCGACATCGTCGGCGAGCTCTTCGGCGAACCCAAGGCGCTGC TCACGGCAGCCGGGATCATGCTGCTGTTCGGCCTGATCCCGGGCATGCCGACGGTCATCTTCGTGGCGCTGGCCGTGGGC TTGTGCGTGGCCGGCGTGGTGGGCATGCTTAAGCCCCTGGCCGACGCCGAGATGGCGCGCGAATCGGAGGAGCTCGAACG CAAGAACGCCGGCATCGTCGATCTCACCAGCTTTGCCGCCACCACGCCCTTCATCCTGCGCATGAACGAGTCCATGCGTG GCAAGGCCGAAGCCGAGGTGATCCGCACGGCGGTGCGCATCATGCGCAACGCCATGCTGGAACGGCGCGGGATTCCCGAC CTCAAGCCCATCGATTTCGAGTTCAGCAGCATGGTGCCGGAAGGGCGGGTGTTCTTCATGATGTCCGAGGTGCCGCTGGT GGATGCCGAGATCATGCTGGGCTGGAGCGCCACCCGGGAATCGCTGGAGCGGGTGCAGGAACTGGGCTTCCAGGGATTCG AACGCAATATTCCCGGTTCGCGCCGGCGCCGCGTCTGGGTCAAGACCGAAGACCCGGAGAAACTGGCCGAGGCGGGCCTG CTGGCCGAATCCTGGGAAAAGGTATTCGCCTCCGACATCGAAGTGGAGATGCTGCGCAACTGCCAGATGTTCGTGGGCGT GAACGAGGTGATCCGCTTCACCCGCTGGGCCGAGCGCCGTTATCCCGAGCTGGGCAAGGAAGTGGTCAAGACCGTCACCC TGCCGCGCCTGACCGAGGTGGTGCAGCGGCTCACCCGCGAAGGCGTGTCGCTGCGCAATGCGCGGCTGCTTCTGGAGACC ACGCTGGACTGGGCGCCCAAGGAGCGTGATCCGGACGTCATCGCCGACTATGTGCGGCTGGCGTTCAAGCGCCAGCTCTG CTTCGAGGCCTCGCGCGAGGGACTCATCGAAGTGATCTTGCTGTCGCCGGAGCTGGAAGACCAGCTGCGCAACGCCATGC GGCAGACCAGCCAGGGCAGCTACCTGGACATCGATTCCGAACTGGAACAGATGATCCTGGACCGCCTCAACGAGCTCTCG ACCAATGTCAGCACCCCGATCGTGCCGCCCGTGCTGGTCACGGCGGCCGATATCCGCCGCTCCGTGCGCAAGCTGATCGA AGAGGAATTCTTCCCCGTCCCGGTGTTTGCGTTTTCCGAGCTGACCCAGCACGCCAAGGTCAAGCCGGTGGGGATGATCG AGGTGTGA Protein sequence : MKAMGIVMLLNKFAIQLGKRAELLAAALVIGIVFMLVLPMPIWLLDILIAMSLCASGLIVVVAMYMAGPTAFSTFPAVLL LTTLFRLAISVSTTRLILLEADAGHIVETFGNFVVGGNLVVGLVIFLILTVVQFIVITKGSERVSEVSARFSLDAMPGKQ MSIDSDLRAGILTPEEAKAKRAHLGQESQLHGAMDGAMKFVKGDAIAGICIVAINLIGGISIGIIQRGMDAGQAMQVYSI LSIGDALIAQIPALLISLGAGIITTRVSDDNEEGETNIGRDIVGELFGEPKALLTAAGIMLLFGLIPGMPTVIFVALAVG LCVAGVVGMLKPLADAEMARESEELERKNAGIVDLTSFAATTPFILRMNESMRGKAEAEVIRTAVRIMRNAMLERRGIPD LKPIDFEFSSMVPEGRVFFMMSEVPLVDAEIMLGWSATRESLERVQELGFQGFERNIPGSRRRRVWVKTEDPEKLAEAGL LAESWEKVFASDIEVEMLRNCQMFVGVNEVIRFTRWAERRYPELGKEVVKTVTLPRLTEVVQRLTREGVSLRNARLLLET TLDWAPKERDPDVIADYVRLAFKRQLCFEASREGLIEVILLSPELEDQLRNAMRQTSQGSYLDIDSELEQMILDRLNELS TNVSTPIVPPVLVTAADIRRSVRKLIEEEFFPVPVFAFSELTQHAKVKPVGMIEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 5e-109 | 45 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 4e-109 | 45 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 3e-109 | 45 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 4e-103 | 45 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 4e-103 | 45 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 2e-108 | 45 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 4e-104 | 44 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 4e-104 | 44 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 3e-102 | 43 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 1e-92 | 43 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-100 | 43 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 1e-105 | 43 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 5e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_003774213.1 | type III secretion HrcV transmembrane protein | VFG0198 | Protein | 5e-92 | 42 |
| hrcV | YP_003774213.1 | type III secretion HrcV transmembrane protein | VFG0384 | Protein | 1e-99 | 42 |
| hrcV | YP_003774213.1 | type III secretion HrcV transmembrane protein | VFG0064 | Protein | 9e-107 | 42 |
