Gene Information

Name : Hsero_0646 (Hsero_0646)
Accession : YP_003774073.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : two component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 711025 - 711738 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATCCTCCTTGCTGAAGACGACAGCGTACTGGCCGACGGTCTGACCCGGTCCCTGCGCCATTCCGGCTACGCCGC
CGACTGCGTCAAGAATGGCGTAGAGGCCGATTCGGCGCTCTCCACCCAGGACTTCGACCTGCTGATCCTGGACCTGGGCC
TGCCCAAGATGTCCGGCCTGGAAGTGCTGCGTCGCCTGCGCGCGCGCAACTCGCGTCTGCCGGTGCTGATCCTGACCGCT
GCTGACTCGGTGGAACAGCGCGTGCAGGGCCTGGACCTGGGTGCGGACGACTACATGGCCAAGCCCTTCGCCCTCTCCGA
ACTGGAAGCGCGGGTGCGCGCCCTGACCCGGCGCGGCGCCGGCGGCGGACCGACGGTGATCCGCCATGGCCCGCTCTCCT
ATGACCAGGTCGGCCGCATCGCCTACATCGGCGAACAGATGCTGGAATTATCAGCGCGGGAACTGGGGCTGCTGGAAGTA
TTATTGCAACGCACGGGTCGCCTGGTCTCCAAGGAACAACTGGTGGACCACCTGTGCGAATGGGGAGAGGAAGTCAGCAA
CAATGCCATCGAGGTCTATGTCCATCGCCTGCGCAAGAAAATCGAAGTTGGCGGCGTACGCATCGCGACCGTGCGCGGGC
TGGGCTATTGCCTGGAGAAACTGCCCGAGGCCGGCAATGCCGCAGCGCTGGCCGCATCCAACAACGCTGCCTGA

Protein sequence : 
MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEVLRRLRARNSRLPVLILTA
ADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEV
LLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGNAAALAASNNAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_0646 YP_003774073.1 two component response regulator protein BAC0487 Protein 3e-39 45
Hsero_0646 YP_003774073.1 two component response regulator protein BAC0083 Protein 1e-34 44
Hsero_0646 YP_003774073.1 two component response regulator protein NC_002516.2.879194.p Protein 1e-31 44
Hsero_0646 YP_003774073.1 two component response regulator protein BAC0638 Protein 1e-27 43
Hsero_0646 YP_003774073.1 two component response regulator protein BAC0308 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_0646 YP_003774073.1 two component response regulator protein VFG0473 Protein 3e-40 45
Hsero_0646 YP_003774073.1 two component response regulator protein VFG1390 Protein 1e-35 43