Gene Information

Name : dctD1 (Hsero_4739)
Accession : YP_003778108.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : two component transcription regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5434673 - 5436073 bp
Length : 1401 bp
Strand : -
Note : -

DNA sequence : 
ATGGAACTGGAGTCCCCGATGGGAAAGACTGCCCCCCTGATGCTGGTCGATGATGATCCCGACCTGCTTCGCCTGTTGAC
GCTGCGCCTCAATGCCAGCGGCTACCGCATCCTGGCCGTGGAGAGCGCCGAGGCCGCGCTGGCGCAGCTGGCCATCTCGC
TGCCGGCGCTGGTGATCACCGATGTGCGCTTGCCCGGCATGGATGGGCTGGCCCTGTTCGCCGAGATCCGCAGCCGCTAT
CCGGCCTTGCCGGTGATCCTTCTTACCGCGCATGGCACCATCCCTGATGCAGTGGACGCCACCACCCAGGGCGCCTTCGC
CTATCTGACCAAGCCCTTCGACGGCCATGTGCTGCTCGACAAGGTCGCCCAGGCCCTGAGCCTGGCGGCGCCGGCGCCGC
TGTCGCCGGACCAGTCGTGGCGGGCCGACATCCTCAGCCGCAGCCAGCGGGTGGCCGAGCTGCTGGCCGAGGCCCGGCTG
GTGGCGGCCTCCGACGCGAGCATCCTGATCCGGGGCGATAGCGGCACCGGCAAGGAGCTGCTGGCGCGCGCCATCCATCG
CGCCAGTGCACGCGCCGAGCAGCCTTTCATCGCCGTCAATTGCGGCGCCATCCCCGAGCAGTTGCTGGAGTCCGAGCTGT
TCGGCCACGTCAAGGGCGCATTCACGGGCGCGGTCGAGCATCGCGAAGGGCTGTTCCAGGCCGCCCATGGCGGTACCTTG
TTCCTCGATGAGATCGGCGACATGCCCCTGCCCCTGCAGGTCAAGCTCTTGCGGGTGTTGCAGGAAAAAACGGTGCGCCA
GGTCGGCGCCAACCAGGCTGGCGAGGTCGATGTGCGCATCATCTCAGCCACCCATCGCGACCTCGAAGCGGCCATGCGCG
AAGGACAGTTCCGCGAGGATCTGTATTACCGCCTCAATGTGGTGACGCTGCACCTGCCGGCGCTGGAAGAGCGGCGGGAG
GATATCGCGCTGCTGGCCAATCACTTCCTCAAGACCATTGCGGCCAAGTATCCCAAGCGCCTCACCGGGTTTGCCCCCGA
CGCGCTGGAGATATTGAGCCTGGCGCACTGGCCGGGCAATGTGCGCCAGCTCTATAACGTGGTGGAGCAGGTCTGCGCCT
TGTCCACCGCACCCTTGATCCCGGCGTCCCTGGTGCAGCGCGCCCTGCGCACGCCGACCCTCGATCTGCTGCGTTATGCC
GAGGCCAAGCAGAAGTTCGAGCGTGATTACCTGATCCGCTTGCTCAAGTTGACTGATGGCAACGTGTCTGACGCCGCCCG
GCTGGCTGATCGCAACCGTACCGAGTTCTATCGCCTGTTGCAGAAGAATGGACTGGATCCCCGGCGTTTCCGCGGTGGGG
AAGAGGCTGTCGTCGCGGGGCGACAGGAGGAAAGGCTTTGA

Protein sequence : 
MELESPMGKTAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLALFAEIRSRY
PALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAPAPLSPDQSWRADILSRSQRVAELLAEARL
VAASDASILIRGDSGTGKELLARAIHRASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTL
FLDEIGDMPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVTLHLPALEERRE
DIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVEQVCALSTAPLIPASLVQRALRTPTLDLLRYA
EAKQKFERDYLIRLLKLTDGNVSDAARLADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAGRQEERL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-59 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-59 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
dctD1 YP_003778108.1 two component transcription regulator protein BAC0467 Protein 4e-72 46
dctD1 YP_003778108.1 two component transcription regulator protein BAC0089 Protein 7e-80 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
dctD1 YP_003778108.1 two component transcription regulator protein VFG1214 Protein 1e-64 49
dctD1 YP_003778108.1 two component transcription regulator protein VFG1249 Protein 1e-65 47
dctD1 YP_003778108.1 two component transcription regulator protein VFG0116 Protein 1e-53 45