Gene Information

Name : Hsero_4634 (Hsero_4634)
Accession : YP_003778008.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : two component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5316483 - 5317829 bp
Length : 1347 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGCGCATCCTGATCGTCGATGACGACGCCGCCTTTCGCGGCAGCCTGGCCGAGACCGTCAGCGACCTCGGCCATGA
CGTGCTGGAAGCCGGCAGCACGGCCGCCGGCCTGAAGTTGCTGGCCGCCCATGCGGTGGATGCCGCCATCGTCGACCTGC
GCATGCCGGACGAAGACGGCCTGGCCTTCCTGCAGCGCGCCCCGGCCATCGCCGCCATCCCCTGCATCATGCTCACCGCC
TATGCCAGCGGCGACAACACTATCGAGGCGATCCGCCTGGGTGCGTTTGATCACCTGACCAAGCCGGTGCCGCGCGCGGC
CCTGGTGGAAACGCTGGAACGCGCCTTGCGCCAGGGCGCCAGCACGCCGGCGGCGGCTTCCCCGGCCACGGAAGAGCGCA
ACCAGTTGGTGGGCGAGAGCGAAGCCATGCGCCAGGTGTTCAAGCAGATCGGCCGCGCCGCCACCAGCGACGCCACCGTA
CTGGTGCTGGGCGAGACCGGCACCGGCAAGGAACTGGTGGCGCGCGCCCTGCATCGCAATGGCGCGCGCGCCGCACGTCC
CTTTGTCGCCGTCAATTGCGCGGCGATTCCGGCCGAGTTGATCGAGAGCGAGCTGTTCGGCCACGTCAAGGGCGCCTTCA
GCGGCGCGACCTCGCCGCGCCTGGGGCGCTTCCAGGAAGCCGATGGCGGCACGCTCTTCCTCGATGAGATCGGCGACATG
GAACTGGCCACCCAGGCCAAGATCCTGCGCGTGCTGCAGGAGCGCGAACTGACGCCAGTGGGCGGCAACCAGTCCGTGCG
GGTCGATGTGCGCGTCATCGCCGCCACCCATCGCGACCTGCAGCACGAGATCACCCAAGGGCGCTTCCGCGAAGACCTCT
GGTATCGCCTGCAGGTCTTGACCATCATGGTGCCGGCGCTGCGCGAGCGGCCTGGCGACATCCTCACCATCGCCGAGCAC
TTCCTGCGCCAGTTGGGCGGCGACGCGCCCAAGCGCATCAGCCCCGCCGCCGCCCGCCTGCTGTTGCAGCACGCCTGGCC
GGGCAATGTGCGCGAGTTGCGCAACACCATGGAACGCGCCGCGGTGATGAGCCATGGGCTGTGCATCGAGGCCGAGGATA
TCGGCTTGTCCGCCCGCCCTCCGGCCGGTGCGGCCAGCGCGGCGAGCGCGCCGGCGATCGACTGGGATGGGCCGCTGGCG
GTGGCACTGGCCGAGGTCGAGCGGGTGATGATAGAGCGCGCCTTGCAGGGAGCTGCCGGCAACCGCGCCGAAGCCGCGCG
CCGGCTGGGAATCTCGCGCCAGCAGCTCTATCGCCGGCTGGAGGAAGCCGGCAAGTCCCACGACTAG

Protein sequence : 
MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIVDLRMPDEDGLAFLQRAPAIAAIPCIMLTA
YASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQGASTPAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATV
LVLGETGTGKELVARALHRNGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFLDEIGDM
ELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRLQVLTIMVPALRERPGDILTIAEH
FLRQLGGDAPKRISPAAARLLLQHAWPGNVRELRNTMERAAVMSHGLCIEAEDIGLSARPPAGAASAASAPAIDWDGPLA
VALAEVERVMIERALQGAAGNRAEAARRLGISRQQLYRRLEEAGKSHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-63 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-63 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4634 YP_003778008.1 two component response regulator protein BAC0467 Protein 3e-73 47
Hsero_4634 YP_003778008.1 two component response regulator protein BAC0089 Protein 5e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4634 YP_003778008.1 two component response regulator protein VFG1214 Protein 2e-68 44
Hsero_4634 YP_003778008.1 two component response regulator protein VFG1249 Protein 1e-65 44
Hsero_4634 YP_003778008.1 two component response regulator protein VFG0116 Protein 1e-59 41