Gene Information

Name : Hsero_4397 (Hsero_4397)
Accession : YP_003777772.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : two component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5030085 - 5030741 bp
Length : 657 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCGTATTGCTGGTGGAAGACGATCCCATGGTGGGCGAAGCGGTGCGCAAGGGTTTGCGCCAGGATGGCTTTGCCAT
CGACTGGGTGCAGGATGGCAAGTCGGCCGACGTGGCGCTGCGCACCGAGGACTACGCCATGCTGCTGCTGGACCTGGGAC
TGCCGCAGAAGGATGGGCTGGCGGTCTTGCGCACGCTGCGCGAGCGCGGCAATGCCATCCCTGTGTTGATCACCACGGCG
CGGGATGCTGTGGCCGACCGCGTGGCCGGGCTCGATGCCGGCGCCGACGATTACCTGATCAAGCCCTTCGACCTGGAAGA
ACTGTCGGCCCGCATGCGCGCCCTCTCGCGCCGCCAGGCGGGGCGCGCCGAGAGCCTGGTGCAGGTGCGCGAAGTGATCT
TGAATCCAGCGACCCATGAAGTGACGGTCAGTGGCAAGCCGGTCAACCTGTCGGCGCGCGAGTTCACGCTCTTGCAGGCC
TTCATGGACCGCCCTGGCGTGGTGCTCTCGCGCGCGCAGCTGGAAGAAAAGCTCTATGGCTGGGATGACAGCATCGAGAG
CAATGCCGTCGAAGTCCACATCCACGCCCTGCGCAAGAAGGTCGGCAGCGACTTCATCAAGAACGTGCGCGGCGTGGGCT
ATCTGGTGCCGGCATGA

Protein sequence : 
MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLAVLRTLRERGNAIPVLITTA
RDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQAGRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQA
FMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4397 YP_003777772.1 two component response regulator protein BAC0487 Protein 6e-44 46
Hsero_4397 YP_003777772.1 two component response regulator protein BAC0197 Protein 7e-39 42
Hsero_4397 YP_003777772.1 two component response regulator protein BAC0083 Protein 4e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4397 YP_003777772.1 two component response regulator protein VFG1390 Protein 7e-36 44
Hsero_4397 YP_003777772.1 two component response regulator protein VFG0473 Protein 1e-44 43