|
Name : thiC (Hsero_0427) Accession : YP_003773860.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 462763 - 464676 bp Length : 1914 bp Strand : + Note : - DNA sequence : ATGAATGCCAACCCGAAATTCCTGTCCGCGACGGCCACCGTCGATGAGGCAGCCATCCAGCCCCTGCCGAATTCCCGCAA GATCTACGTGACCGGCTCGCGCCCGGACATCCGCGTGCCCATGCGCGAGATCAGCCAGGCCGACACGCCGGCCATGTTCG GTTCGGAAAAGAACCCGCCCATCTACGTCTATGACACCTCCGGCCCCTATACCGACCCGGAGGTGAAGATCGACATCCGC GCCGGCCTGTCCACCCCGCGCCTGCCCTGGATCCTCGAGCGCGACGATACCGAGGAGCTGCCCGGCCCGACTTCAGAATA CGGCCAGCAGCGCCTGAACGACCCGGCCCTGGCCGAGCTGCGCTTCAACCTGCACCGCAAGCCGCGCCGCGCCAAGGCGG GCGCCAACGTCACCCAGATGCACTACGCGCGCCGTGGGATCATCACGCCCGAGATGGAGTTCATCGCCATCCGCGAAAAC CTGCGTCGCAAGGAATATCTGGAGCAGCTGAAGGCTTCCGGCCCGATGGGCAACAAGCTGGCCGACCTGATGGGCCGTCA GCATCCCGGCCAGTCCTTCGGCGCTTCCATCCCCGCCGAGATCACGCCGGAATTCGTGCGTGATGAGGTGGCGCGCGGCC GCGCCATCATCCCCGCCAACATCAACCATCCGGAAGTGGAACCGATGATCATCGGCCGCAATTTCCTGGTCAAGATCAAC GCCAACATCGGCAACTCGGCGGTGACCTCTTCCATCGGCGAGGAAGTGGAAAAGATGACCTGGGCCATCCGCTGGGGCGG CGACAACGTCATGGACCTGTCCACCGGCAAGAACATCCACGAAACCCGTGAGTGGATCATCCGCAATTCGCCGGTGCCCA TCGGCACCGTGCCGATCTACCAGGCCCTGGAAAAGGTCAACGGCAAGGCCGAAGACCTGACCTGGGAAATCTTCCGCGAT ACCCTGATCGAGCAAGCCGAGCAGGGCGTGGACTACTTCACCATCCACGCTGGCGTGCGTCTGCAATACGTGCCGCTGAC GGCCAAGCGCATGACCGGCATCGTCTCGCGTGGCGGTTCCATCATGGCCAAGTGGTGCCTGGCGCATCACCGCGAATCCT TCCTCTACGAACACTTCGAAGAGATCTGCGAGATCATGAAGGCCTATGACGTCAGCTTCAGCCTGGGCGATGGCCTGCGT CCCGGTTCGATCTACGACGCCAACGACGAAGCCCAGCTGGGCGAACTGCGCACCCTGGGTGAACTGACCCAGATCGCCTG GAAGCACGACGTGCAGGTGATGATCGAAGGCCCCGGCCACGTGCCTATGCATCTCATCAAGGAGAACATGGACCTGCAAC TGGAGCAGTGCCACGAAGCACCGTTCTACACCCTCGGCCCCTTGACCACCGACATCGCGCCCGGCTATGACCACATCACC TCCGGCATCGGCGCGGCCCAGATCGGCTGGTATGGCACGGCCATGCTGTGCTACGTCACGCCCAAGGAACACCTGGGCCT GCCCAACAAGACCGATGTGAAGGACGGCATCATCACCTACAAGATCGCCGCGCACGCCGCCGACCTGGCCAAGGGCCATC CGGGTGCGCAGATCCGCGACAACGCGCTGTCCAAGGCGCGCTTCGAATTCCGTTGGGAAGACCAGTTCAACATCGGTCTC GATCCCGACAAGGCGCGCGAATTCCACGACGAAACCCTGCCCAAGGATTCGGCCAAGGTGGCGCACTTCTGCTCCATGTG CGGCCCGCACTTCTGTTCCATGAAGATCACCCAGGAAGTGCGCGATTACGCCGCCAAGGAAGGCATCTCCGAGATCGATG CATTGAAGCAGGGGATGCAGGTCAAGTCGGTGGAGTTCGTCAAGATGGGCGCCGAGATTTATTCGAAGCAGTAA Protein sequence : MNANPKFLSATATVDEAAIQPLPNSRKIYVTGSRPDIRVPMREISQADTPAMFGSEKNPPIYVYDTSGPYTDPEVKIDIR AGLSTPRLPWILERDDTEELPGPTSEYGQQRLNDPALAELRFNLHRKPRRAKAGANVTQMHYARRGIITPEMEFIAIREN LRRKEYLEQLKASGPMGNKLADLMGRQHPGQSFGASIPAEITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFLVKIN ANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSPVPIGTVPIYQALEKVNGKAEDLTWEIFRD TLIEQAEQGVDYFTIHAGVRLQYVPLTAKRMTGIVSRGGSIMAKWCLAHHRESFLYEHFEEICEIMKAYDVSFSLGDGLR PGSIYDANDEAQLGELRTLGELTQIAWKHDVQVMIEGPGHVPMHLIKENMDLQLEQCHEAPFYTLGPLTTDIAPGYDHIT SGIGAAQIGWYGTAMLCYVTPKEHLGLPNKTDVKDGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNIGL DPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQEVRDYAAKEGISEIDALKQGMQVKSVEFVKMGAEIYSKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 75 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 75 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 73 |
