Gene Information

Name : Hsero_4252 (Hsero_4252)
Accession : YP_003777629.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Resistance
Product : polar amino acid ABC transporter ATPase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1126
EC number : -
Position : 4865213 - 4865947 bp
Length : 735 bp
Strand : +
Note : -

DNA sequence :
ATGCCGCTCATCGCCATTGACAACGTCAAGAAACGCTTCGGCGACAACGAAGTCCTCAAGGGCATCAGCCTGGACGTCGA
ACCCGGAGAAGTGATCGCCATCATCGGCAAGAGCGGCTCGGGCAAGTCCACGCTGCTACGCTGCATCAACGGCCTGGAGA
GCATCGACGAAGGCAACATCAGCGTGGCCGGCGCCAAGCTGGGCGCCAGCGAACTGGAACTGCGCAACCTGCGCCTGAAG
GTCGGCATGATCTTCCAGCAGTTCAACCTGTTCCCGCATCTCTCGGTGGGGCGCAACGTGATGATCGCGCCGATGATCGT
CAAGGGCGTCAGCGAAGCCGAGGCCATGAAGACGGCCAAGGCCAACCTGGAAAAAGTCGGCCTGGGCCACAAGTTCGACG
CCTACCCCGACCAGCTCTCCGGCGGCCAGCAGCAGCGCGTAGCCATCGCCCGCGCGCTGTCGATGAGTCCGCAGGCATTG
CTGTGCGACGAGATCACCTCGGCGCTGGACCCCGAGCTGGTCAACGAAGTGCTGACCGTCATGCGCGGGCTGGCCAAGGA
AGGCATGACGCTGCTGATGGTCACCCACGAAATGCGTTTTGCCCGCGAGGTCTGCAATCGGCTGGTGTTCATGCACCAGG
GCAAGGTCCATGAGATCGGCCCGCCGGAGGAACTGTTCGGCAATCCCAAGACGCCGGAATTGCAGCAGTTCATTGGGATG
ACGCAGGGGGCTTGA

Protein sequence :
MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISVAGAKLGASELELRNLRLK
VGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQAL
LCDEITSALDPELVNEVLTVMRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM
TQGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 43
SAR0461 YP_039910.1 ABC transporter ATP-binding protein Not tested vSa¥á Protein 2e-42 42
SAS0419 YP_042546.1 ABC transporter ATP-binding protein Not tested vSa¥á Protein 1e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4252 YP_003777629.1 polar amino acid ABC transporter ATPase NC_012469.1.7686878. Protein 3e-28 43