Gene Information

Name : capD (Hsero_4222)
Accession : YP_003777599.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : 4.2.1.46
Position : 4828803 - 4830749 bp
Length : 1947 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACAACCTCTCTTCAAACTGGCCATACCCATACTGGCATTGCCCCGGGCCACAAAGCGCTTGGTCGCCGTATCAGT
AGATATGGGCCTGTGTGTATTGACCGTCTGGCTGGCCTACTACCTCCGCCTGGGCGAATTCGTGGCGTTGTCAGGCACTG
CCCTGTGGGCAGCCGGCGCCTCGGTCATGCTGGCCTTGCCCATCTTCATCGTCTCCGGGCTGTACCGCGCCATCTTTCGC
TACAGCGGCTGGCCAGCCCTGCTGGCAGTGGCGCGGGCGGTGGGCATCTACGGTCTGCTGTATGCCTCCATCTTCACCTC
CATCAGCGTGCCGGGTGTGCCGCGCACGGTGGGCATCATCCAGCCTATCCTGCTGTTGCTGTTCGTGGGTGCATCGCGTG
CCCTGGCGCGCGTATGGCTGGGTGACCAGTACCTGAGCATCCTCAAGCAAGCCAGCCGCCCCAAGGTACTCATCTACGGC
GCCGGCAGCACCGGACGCCAGCTGGTCGCCGCCATGGCCAGCAGCCATGAGATGCAGGTGGTCGGCTTCCTCGATGATGA
CGACAGGCTGCACGGCCATGTCCTCAATGGACAGCCCATCTACAACCCCGCCGACCTGTCCAGCCTGGCCTCCACCCTGA
GCATCAGTAACGTACTGCTGGCCATGCCCAGCCTGAGCCGCAAGCGCCGCAATGAAATCCTGGCGCAGATCCGCACCGCC
CGGGTGGCCGTACGCACGCTGCCCAGCGTGACCGATCTGGCCCAGGGACGCGTGAACGTCTCCGATCTGCGCGAGCTGGA
TATCGATGACCTGCTCGGCCGCGAACCCGTCATGCCCAACCACATCCTGCTGGCCATGAACGTACGCAGCAAGGTGGTCA
TGGTCACCGGTGCAGGCGGCTCCATCGGCAGTGAACTGTGCCGCCAGATCCTGGCGGTCGGTCCGAGCAAGCTGCTGCTG
ATCGAGCAGAGCGAGTTCGCGCTCTACGCCATCCACCAGCAGCTCGAAGAAAAACTGGCCGACCGTGACATCGTGCTGGT
CCCCCTGCTGGCGTCGGTGCAGGACAGCGAACGCATCCGCGAGATCATGTCGACCTGGCATCCGGATACCGTCTATCATG
CTGCGGCCTACAAGCACGTGCCGCTGGTGGAGCACAACCCGGCCGAAGGCATCAAGAACAATGTCCTCGGTACGCTGCGC
ACGGCCCAGGCTGCCACCGAGAATGGCGTGGCCGACTTCGTGCTCATCAGCACCGACAAGGCGGTGCGCCCCACCAATAT
CATGGGCGCCAGCAAGCGCCTGGCCGAGATGGTGCTGCAGGCCATCGCGGCCACCAGCCCTGGCACCAAGTTCAGCATGG
TGCGCTTCGGCAATGTGCTGGGCTCTTCCGGCTCGGTGGTGCCCAAGTTCCGGCAGCAGATCCGGGATGGCGGTCCGATC
ACGCTGACCCACGCCGACATCACCCGCTACTTCATGACCATTCCCGAGGCTTCGCAGTTGGTGATCCAGGCCGGTGCGAT
GGCCAAGGGTGGCGACGTCTTTGTCCTGGACATGGGCCAGGCAGTCAGGATCATGGACCTGGCGCGGCGCATGATCGAGC
TGTCCGGCCTGACGGTCAAGGATGAGCTCAATCCGGAAGGCGATATCGCCATCGAGATCACCGGATTGCGCCCGGGTGAA
AAACTGTATGAAGAACTGCTGATCGGCGACAACCCCAAGCCTACCTCGCACTCGCGGATCATGAAGGCGCACGAGGAGTT
CATCCCCTGGGCCGAGCTGGAAGCCAGGCTCAGTGCGCTGGAAATGGCGCTCAATGTGAATGACGTAGGAGTCATCCGCC
TGATGATGGAAAAGCTGGTCACCGGCTATACGCCCTCCGACGAAATCGTCGACTGGGTCTACCTGGAACAGGAAGCAGAA
GCACAAGCGCTGGGCCTGGCCAGTTGA

Protein sequence : 
MKQPLFKLAIPILALPRATKRLVAVSVDMGLCVLTVWLAYYLRLGEFVALSGTALWAAGASVMLALPIFIVSGLYRAIFR
YSGWPALLAVARAVGIYGLLYASIFTSISVPGVPRTVGIIQPILLLLFVGASRALARVWLGDQYLSILKQASRPKVLIYG
AGSTGRQLVAAMASSHEMQVVGFLDDDDRLHGHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTA
RVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGGSIGSELCRQILAVGPSKLLL
IEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSERIREIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLR
TAQAATENGVADFVLISTDKAVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDGGPI
TLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGLTVKDELNPEGDIAIEITGLRPGE
KLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLMMEKLVTGYTPSDEIVDWVYLEQEAE
AQALGLAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-90 46
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 3e-85 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capD YP_003777599.1 polysaccharide biosynthesis protein VFG0029 Protein 3e-121 47
capD YP_003777599.1 polysaccharide biosynthesis protein VFG1300 Protein 6e-85 44