Gene Information

Name : Hsero_4221 (Hsero_4221)
Accession : YP_003777598.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : galactosyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 4828194 - 4828754 bp
Length : 561 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACGTCTGTTCGACTTTGCAGTGGCCCTGGTTGCCTCGGTATTGCTTGCCATTCCCATTGTCATGGTGATGTTGGC
TGTGCGCCTGACCTCCCCAGGTCCGGCGCTCTACTGGAGTGAGCGCGTCGGGCGCCACAACCGCATATTCAAGATGCCGA
AATTCCGTAGTATGCGCATTGATACGCCGGCTGTGGCGACCCACCTGCTTGAGGATCCAGCGCAATGGCTGACACCGATT
GGATCATTCCTGCGCAAGTCAAGCCTGGATGAGCTGCCCCAATTGTGGAGCATCCTCCGCGGCGACATGAGCCTGGTCGG
TCCTCGTCCAGCATTATTTAATCAAGACGATCTGATCACGTTGAGAACCAGCCAAGGTGTGCACGAGCTGGTTCCAGGAC
TGACTGGCTGGGCGCAGATCAATGGCCGCGATGAGTTGCCCATCCCAGATAAAGTGCGGCTCGATGCCGAATATCTTCAG
CGACGGTCGTTTCTGTTCGACCTGAAGATTCTCTGGATGACAGCCTTGAAAGTATTGGCACGGCACGGTGTGTCACATTA
A

Protein sequence : 
MKRLFDFAVALVASVLLAIPIVMVMLAVRLTSPGPALYWSERVGRHNRIFKMPKFRSMRIDTPAVATHLLEDPAQWLTPI
GSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDLITLRTSQGVHELVPGLTGWAQINGRDELPIPDKVRLDAEYLQ
RRSFLFDLKILWMTALKVLARHGVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 6e-35 48
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-35 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_4221 YP_003777598.1 galactosyltransferase VFG1369 Protein 1e-32 48
Hsero_4221 YP_003777598.1 galactosyltransferase VFG1309 Protein 3e-34 45