Gene Information

Name : galE (Hsero_4194)
Accession : YP_003777571.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : UDP-galactose-4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 4799396 - 4800469 bp
Length : 1074 bp
Strand : +
Note : -

DNA sequence : 
ATGACAAGCGCTTACGAGACGTTGCAGCAAGAACTTCCCCTGACCCCGCGAACCTGGCTGGTCACGGGTGTGGCTGGATT
CATTGGCAGCAACCTGCTGGAGACGCTGCTCAAGCTGAACCAGCGCGTCGTTGGCCTGGACAACTTCAGTACCGGTTTCC
AACACAACCTTGATGAAGTCAAAGCGCTGGTGACTCCTGAGCAGTGGGCAAATTTCCGCTTTGTGGAGGGCGACATCCGC
AAGCTGGACGATTGCCGCGCAGCCATGCACCACGAGGCTCTGGGCAGCAATATCGTTGAATACGTACTGCATCAGGCCGC
CCTAGGTTCCGTTCCGCGCAGTATTGAAGACCCGATCACCACCAATCAGAACAATATCGACGGTTTCCTGAATATGCTGG
TTGCTGCGAGAGATGCACGCGTCAAGCGCTTCGTGTACGCCGCCAGCAGCTCGACCTACGGTGACCATCCTGGTCTGCCC
AAGGTAGAAGACCGGATCGGCAAGCCACTCTCCCCCTATGCGGTTACGAAGTTCGTCAACGAGCTCTACGCCGACGTGTT
CGCGCGGACCTATGGCTTGCAAACCATAGGTTTGCGCTACTTCAATATCTTTGGACGCCGGCAAAACCCTGATGGCGCCT
ACGCGGCGGTGATTCCCAAGTGGATCGCCGCCGCCATCAAGGGCGAGCAGATTTACATTAACGGCGACGGCGAAACAAGT
CGGGATTTCTGCTACGTCGACAATGCAGTCCAGGCCAATCTGCTGGCTGCATGCACGCTCCAGGATGAGGCGGCCAATCA
AGTCTACAACGTGGCTGTGGGTGATCGCACGACGCTCAAGGAGCTCTACCAGTTCCTGCGAGACAATCTCAGTGCCACCT
TCCCTCATCTCAGGGACGCTCAGCCCATCTTCCGGGAGTTCAGAGCAGGAGACGTCCGACATTCCCTAGCCGACATCGGC
AAGGGCCGGCGCCTGTTGGGCTATGAACCTAGCCACAGGATCGGACGTGGCCTGAAGGAATCCATGAACTGGTACGTACA
GCAACTGCGCAATCAAAGCGTAGAAAACCGATAG

Protein sequence : 
MTSAYETLQQELPLTPRTWLVTGVAGFIGSNLLETLLKLNQRVVGLDNFSTGFQHNLDEVKALVTPEQWANFRFVEGDIR
KLDDCRAAMHHEALGSNIVEYVLHQAALGSVPRSIEDPITTNQNNIDGFLNMLVAARDARVKRFVYAASSSTYGDHPGLP
KVEDRIGKPLSPYAVTKFVNELYADVFARTYGLQTIGLRYFNIFGRRQNPDGAYAAVIPKWIAAAIKGEQIYINGDGETS
RDFCYVDNAVQANLLAACTLQDEAANQVYNVAVGDRTTLKELYQFLRDNLSATFPHLRDAQPIFREFRAGDVRHSLADIG
KGRRLLGYEPSHRIGRGLKESMNWYVQQLRNQSVENR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-109 64
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-109 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
galE YP_003777571.1 UDP-galactose-4-epimerase VFG0430 Protein 1e-109 64