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Name : clpB (Hsero_4031) Accession : YP_003777410.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : ClpA/B-type chaperone ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4626207 - 4628876 bp Length : 2670 bp Strand : - Note : - DNA sequence : ATGGGAATCAATCTCAGATCATTAATTTGCAAACTCAATGAGACCGCACGCCTGGCTACCGAACGCGCCGCCACGCTGTG CGTGTCATGTAGCCATTATGAAGTGGACCTGGAGCATCTCTTTCTGGCCTTGCTTGAGCAACCGCAGTCAGACTTCAGCC TGATCGCGCGCCGAAGCGGCATCGATACCGATGGCCTGCAAGCCGATCTGGAGCACGAGATCTCGACCTTCAGAGAGGGC AATGCGCGTACTCCTGTCCTGTCTCCGCACCTGCGCACGTTGTTCGAGAACGGATGGCTCATTGCCTCGCTGGAGGAAAG TAATCCTTCCGTTCGCAGTGCGCACTTGTTGCTGGCGCTGCTGACTCAAAGCGATTTGTCGCAGCTTGCGTATCGTGGAT CGAAGCTATTTGCCAAATTCAAGATCGATGAAATCAAGCACAATTTGCACAGGCTTACCGAAGGATCCGTGGAGTCGGCT GCAATCGGCAAGACAGGTCAGGGCGGCGACAGGGAGAGTGGTGGCGACCCGATGGGCGAACTCAAGCAGCTTCGCATCGG CAAGATGACTGCGCTGGATCAGTACACTACGCAGCTAACGCAACGTGCCCGCGATGGCAAGATAGATCCGGTCATTGGCC GCGATGCTGAGATCCGGCAGGCAGTCGATATTCTGCTCCGCCGTCGGCAAAACAATCCGATCCTGACCGGCGAGGCTGGC GTGGGAAAGACCGCCGTGGTGGAGGGGCTGGCCCTGCGTATCGCCCAGGGCGATGTGCCGAAGCCCTTGCAGGGAGTTGA GATCCATACCCTGGACATGGGCCTGCTGCAGGCGGGGGCTAGCGTCAAGGGTGAGTTTGAGAGTCGCCTCAAAACCGTGA TCGATGAGGTCAAGAAGAGCGCATATCCCATCATTCTCTTCATCGATGAGGCGCACACCATGATTGGCGCCGCTGGCCAG GCCGGCCAGAGCGATGCAGCCAACCTGCTCAAGCCGGCCCTGGCGCGGGGCGAGCTACGCACGATCGCGGCAACCACCTG GAGCGAATACAAGAAATATTTCGAAAAAGATGCCGCGCTGGCCCGACGGTTCCAGGTCATCAAGGTAGAAGAGCCGGGCG AGGATGTGGCCTGCGCGATGCTACGTGCCATGGTGCCTCTCATGGAGCAGCATTTCGGAGTGCGCGTCTATGATGAAGCC GTCGTCGAAGCCGTCAGGCTTTCGCACCGCTATATCAGCGGACGTCAGCTGCCCGACAAGGCCATTAGTGTGCTCGACAC GGCCTGCGCCAAGGTGGCGCTCGGGCGGGATGCCACTCCCGCACTACTGGAAGGTGTCACCCGACGCCTTGAGCGCCTGG ATACGGAGATTTCGGCGCTCAGGCGTGAGGCTGCCAGCGGTTCGCAGCATGAGGAGCGACTGGCGTCGCTGCTGGATCAG CATGTTTGTGCTGTAGCCGAACGGCATGATTTGCAGTTGCGCTGGGAGCAGGAGCGTGAACTCAACGAACGCATCCAGCA AGCTCGTGCCACTCTGGAAAATCCCGGTACGGGAGACGCCCGAGGCGGTAACGTGGACGCCGCTCGGGCGGAGCTGAAGC AGTTGTTGGATGAGCTCAGGCAACGCCAGGGTGACGCGCCGATGGTGCCGATCCAGGTGGATGGGCATGTGGTTGCCGAG ATCGTGGCCGCGTGGACCGGAATCCCATTGGGTAAGATGGTCAAGGACGAAATCCAGACGGTGCTGGATCTGGACGCATT GCTGCAAGAGCGTGTTCTAGGGCAGCCGCAGGCTACTTCAGCCGTGGCGCAGCGTGTACGAACATCTCGGGCCAATCTGG ATGATCCCGGCAAGCCCAAGGGCGTATTCCTGTTTGTGGGGCCGTCTGGGGTAGGCAAGACCGAGACAGCGTTGGCGCTG GCTGATGTGCTCTACGGTGGCGAACGCAAGTTAATCACCATTAACATGAGCGAATACCAGGAAGCCCATACGGTCTCTGG CCTGAAGGGTTCGCCGCCCGGCTATGTCGGCTATGGTGAAGGCGGTGTGCTGACCGAGGCCGTACGCCGCAATCCCTACA GTGTGGTGCTGCTCGACGAGGTCGAGAAGGCCCACGCGGATGTCCTGGAGCTATTCTTCCAGGTCTTCGACAAGGGAGTG ATGGATGATGCCGAAGGACGCGAGATTGATTTCAAGAACACCATCATCATCCTCACCAGCAATGTGGCTTCCGCGCAGAT GATGCAGGCTTGCTTGAACAAGAGCCAGGAAGAATTGCCTACCCCTGAAGAACTTGACACTCTGATTCGACCACAGCTGA TCAAGACCTTCAAGCCGGCATTTCTCGGGCGCTTGAAGGTCGTTCCCTATTACCCGATTGCCGACGTCGTGCTGGTCGAG ATCATCAAGCTCAAGCTAGCGCGTATTGCCAAGCGTGTTGCCGAGAATCATAGGGTCGAGTTCAGCTACGACAAGGCGCT CGTCGAGGCTGTGCTGGGGCGTTGCACCGAGGTGGACTCGGGCGCACGCAATGTTGACAACATCCTTAGCGGAACTCTTT TGCCTGCGGTTGCCGAAAGTGTGCTGGTGCGCATGGCCGAAGGTGTGGAGATTCGCCGTATTAAGGTATCGGCCAGCAAG AAAGGTGATTTCAAGTACACCATCCAATAG Protein sequence : MGINLRSLICKLNETARLATERAATLCVSCSHYEVDLEHLFLALLEQPQSDFSLIARRSGIDTDGLQADLEHEISTFREG NARTPVLSPHLRTLFENGWLIASLEESNPSVRSAHLLLALLTQSDLSQLAYRGSKLFAKFKIDEIKHNLHRLTEGSVESA AIGKTGQGGDRESGGDPMGELKQLRIGKMTALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGEAG VGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGASVKGEFESRLKTVIDEVKKSAYPIILFIDEAHTMIGAAGQ AGQSDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPGEDVACAMLRAMVPLMEQHFGVRVYDEA VVEAVRLSHRYISGRQLPDKAISVLDTACAKVALGRDATPALLEGVTRRLERLDTEISALRREAASGSQHEERLASLLDQ HVCAVAERHDLQLRWEQERELNERIQQARATLENPGTGDARGGNVDAARAELKQLLDELRQRQGDAPMVPIQVDGHVVAE IVAAWTGIPLGKMVKDEIQTVLDLDALLQERVLGQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALAL ADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHADVLELFFQVFDKGV MDDAEGREIDFKNTIIILTSNVASAQMMQACLNKSQEELPTPEELDTLIRPQLIKTFKPAFLGRLKVVPYYPIADVVLVE IIKLKLARIAKRVAENHRVEFSYDKALVEAVLGRCTEVDSGARNVDNILSGTLLPAVAESVLVRMAEGVEIRRIKVSASK KGDFKYTIQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-151 | 47 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-136 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-136 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_003777410.1 | ClpA/B-type chaperone ATPase | VFG2076 | Protein | 0.0 | 50 |
| clpB | YP_003777410.1 | ClpA/B-type chaperone ATPase | VFG2084 | Protein | 1e-150 | 45 |
| clpB | YP_003777410.1 | ClpA/B-type chaperone ATPase | VFG0079 | Protein | 9e-103 | 42 |
