|
Name : Hsero_3968 (Hsero_3968) Accession : YP_003777347.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : sugar phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.- Position : 4554244 - 4555272 bp Length : 1029 bp Strand : + Note : - DNA sequence : ATGAGTGTAACCGATGACAAAACCACGCCTGCATCTTTTTCGGCCGGGGCCGCCCGCCGCGCCATCGAACTGGCGCGCCA GACCCTGCAGATCGAAGCCGATGCCATCCTGGCCCTGAAGAACCGCCTTGGCGACGACGCCAGCGAACCGCTGGCCCAGG CCGTCCACCTGTTGCTGCAGTGCAATGGCCGCGCCGTTGTCTCGGGCATCGGCAAATCCGGCCATATCGGCCGCAAGATC GCCGCTACCCTGGCCTCGACCGGCACGCCCTCGCTGTTCATGCATCCGGCCGAGGCCGCCCATGGCGACCTGGGCATGGT CACGCCCAATGATGTGTTCATCGCCATCTCCAATTCCGGGGAAACGGGCGAGCTCATGGCCATCATGCCCATCGTCAAGC GCATGGGCGCGGTGATCATCGCCATGACCGGCAATGACAATTCCAGCCTGGCGCGCATGGCCAACGTGCATCTGAACGTG GGCGTGGACAAGGAAGCCTGTACCCTCAACCTGGCCCCCACCGCCAGCACCACGGCCACGCTGGCCATGGGCGATGCGCT GGCGGTCTCGCTGCTGGATGCGCGCGGCTTCCTGGAAGAAGATTTTGCCCGCTCCCACCCCGGTGGCGCGCTGGGCCGTC GCCTGCTCACCCATGTGCGCGACGTCATGCGCAGCGGCGACGCCATTCCGGCAGTGAGCCCGGATGTCTCGCTGTCGCAG GCGCTCATGGAGATCACGCGCAAGGGCATGGCCATGACCGCCGTGGTGGATGCGGACTTCCGCCCCATCGGCGTGTTCAC CGATGGCGACCTGCGCCGCCTGCTCGAACGCGGCCAGGACTTCAGCCAGTTCCGCATCGCCGAGATCATGCACGCCAATC CGCGCACCGTGAACCAGGACCAGCTCGCCGTGGACGCGGTGCAGCTGATGGAAGAATTCCGCATCAACCAGCTGCTGGTC ACCGATGCCCAGGGCGTGCTGACCGGCGCCCTGCACATCCATGACCTGACCCGCGCCAAGGTGATCTGA Protein sequence : MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKNRLGDDASEPLAQAVHLLLQCNGRAVVSGIGKSGHIGRKI AATLASTGTPSLFMHPAEAAHGDLGMVTPNDVFIAISNSGETGELMAIMPIVKRMGAVIIAMTGNDNSSLARMANVHLNV GVDKEACTLNLAPTASTTATLAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDVMRSGDAIPAVSPDVSLSQ ALMEITRKGMAMTAVVDADFRPIGVFTDGDLRRLLERGQDFSQFRIAEIMHANPRTVNQDQLAVDAVQLMEEFRINQLLV TDAQGVLTGALHIHDLTRAKVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 4e-54 | 46 |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 3e-54 | 45 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 2e-54 | 45 |
