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Name : kdpB (Hsero_3778) Accession : YP_003777164.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : high-affinity K+ transport system ATPase Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 4327840 - 4330032 bp Length : 2193 bp Strand : - Note : - DNA sequence : ATGACTACCCCTTCCAGCAATACCTCCGCCAGCGCAACGGTCACGCCTGAAGCCATCCCTTCGGCCGCCCAGACCGCGCG CTGGATGTTCGATCCCAAGATCGTCAAGCCGGCCCTGGCCGATTCCTTCCGCAAGCTCTCGCCGCGCGCGCAGTGGCGCA ATCCGGTGATGTTCGTGGTCTACCTGGGCAGCATCCTGACCACGCTGCTGTTCATCCAGGCCGCCGTCGGCCAGGGTGAG GCGCCGGCCGGCTTCATCTTCGCCATCGCCGCCTGGCTGTGGTTCACGGTGCTCTTCGCCAACTTCGCCGAAGCCCTGGC CGAAGGCCGCAGCAAGGCCCAGGCTGCCGCCCTGCGCGGCGTCAAGAAGAGCGTGATGGCCAAGAAGCTGCGCCGCGCCG ACCACGTCCGTGGCGATGGCATGCAAGTATTGGCCAGCCAGTGCGAAGTGGTGGAAGGCGACAGCCTGCGCAAGGGTGAC CTGGTGCTCATCGAAGCGGGCGACACCGTGCCGGCCGACGCCGAAGTCATCGAAGGCGTGGCGACCGTGGATGAAAGCGC CATCACCGGCGAATCCGCCCCGGTGATCCGCGAATCCGGCGGCGACTTCTCGGCCGTCACCGGCGGCACCCGGGTGCTGT CGGACTGGATCGTGGTGCGCGTCTCGGTCAATCCGGGCGAAGCCTTCCTGGACCGCATGATCGCCATGGTCGAAGGCGCG CGCCGCCAGAAGACCCCCAATGAACTGGCGCTGACCCTGCTGCTGGTGGCGCTGACGCTGGTGTTCTTGCTGGTGACGGT GACCTTGCTGCCGTTCTCGATCTTCTCGGTCAATGCCGCCGGGTCGGGCTCGCCGGTCTCGGTGACGGCCCTGATCGCAT TGCTGGTGTGCCTGATTCCGACCACCATCGGCGGCCTGCTCTCGGCCATCGGCGTGGCCGGCATGAGCCGCATGATGCAG GCCAATGTGATCGCCACCTCCGGCCGGGCGGTGGAAGCCGCCGGCGACGTCGATGTGCTGTTGCTGGACAAGACCGGCAC CATCACCCTGGGCAATCGCCAGGCCGCAGCCTTCATGCCGGCGCCGGGCGTCACAGAGCGCGAGCTGGCCGATGTGGCGC AACTGGCCTCGCTGGCCGATGAAACCCCGGAAGGCCGCAGCATCGTGGTGCTGGCCAAGAACCGCTTCAACCTGCGCGAG CGCGAGATGGCCAACCTGGGCGCGGAATTCATCCCGTTCTCGGCGCAGACCCGCGTCTCCGGCATCGACCTGGGGCACCG CCGCATCCGCAAGGGCGCCGCCGACGCCATCCGCAAGCTCACCCGCGCCGCCGACCAGCGCCTGCCGGCCCAGGTCGAGA GTGATATCGAATCCATCGCCCGCCGTGGCGGCACGCCCCTGGTGGTCATCGAATGGCATGCCGAGGCGGCCATGATCAAC CAGGGCGCACCGATCCGCATCCTCGGCACGGTGGAGTTGAAGGACATCGTCAAGGGCGGCATCAAGGAGCGCTTTGGCGA GCTGCGCCGCATGGGCATCAAGACCGTCATGATCACCGGCGACAACCGCCTGACCGCTGCCGCCATTGCCGCCGAGGCCG GGGTTGATGATTTCCTCGCCGAGGCCACGCCGGAACAGAAGCTGGCCCTGATCCGCCAGCACCAGGCCGAGGGCAAGCTG GTGGCCATGACCGGTGATGGCACCAATGACGCGCCCGCACTGGCCCAGGCCGACGTGGCCGTGGCCATGAACAGCGGCAC CCAGGCCGCCAAGGAAGCCGGCAACATGGTCGATCTGGATTCCAATCCGACCAAGCTGATCGAGATCGTCGAGATCGGCA AGCAGATGCTGATGACACGCGGCAGTCTCACCACCTTCAGCATCGCCAACGACGTGGCCAAGTACTTCGCCATCATCCCG GCCATGTTCGTGGGCAGCTATCCGCAACTGGGCGCGCTCAACGTGATGCACCTGGCCAGCCCCGACTCGGCCATCATGTC GGCGGTGATCTTCAATGCACTGGTGATCGTGGCCCTGATTCCGCTGGCCCTGCGCGGGGTGCGCTATCGCGCCCTGGGTG CAGCCGTGCTCCTGCGCCGCAACCTGCTGATCTATGGCGTGGGCGGCCTCTTGGTGCCTTTCGTGGGCATCAAGCTGATC GACCTGCTGCTGAGCGCCTTCGGCCTGGTCTGA Protein sequence : MTTPSSNTSASATVTPEAIPSAAQTARWMFDPKIVKPALADSFRKLSPRAQWRNPVMFVVYLGSILTTLLFIQAAVGQGE APAGFIFAIAAWLWFTVLFANFAEALAEGRSKAQAAALRGVKKSVMAKKLRRADHVRGDGMQVLASQCEVVEGDSLRKGD LVLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRVSVNPGEAFLDRMIAMVEGA RRQKTPNELALTLLLVALTLVFLLVTVTLLPFSIFSVNAAGSGSPVSVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQ ANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLRE REMANLGAEFIPFSAQTRVSGIDLGHRRIRKGAADAIRKLTRAADQRLPAQVESDIESIARRGGTPLVVIEWHAEAAMIN QGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKL VAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGSLTTFSIANDVAKYFAIIP AMFVGSYPQLGALNVMHLASPDSAIMSAVIFNALVIVALIPLALRGVRYRALGAAVLLRRNLLIYGVGGLLVPFVGIKLI DLLLSAFGLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 7e-174 | 61 |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 9e-174 | 61 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 53 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 53 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 53 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 5e-140 | 53 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 4e-141 | 53 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 4e-140 | 53 |
