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Name : ribD (Hsero_3654) Accession : YP_003777040.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : bifunctional diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG1985 EC number : 3.5.4.26 Position : 4186588 - 4187652 bp Length : 1065 bp Strand : + Note : involved in riboflavin biosynthesis DNA sequence : ATGGCGCTGGCCCTGATCCAGGCCGGCTTCGGCATGCTCGACACCACGCCCAATCCGCGTGTGGGCTGCGTCATCGTCAA GGACCAGCGCATCATCGGCGCCGGCTTCACCCAGCCGCCCGGCGGCAACCACGCCGAGATCCAGGCCATGGCCGACGCCG CCGCGCGTGGCCACGACGTGCGCGGCGCGACCGTCTACGTCACCCTGGAACCCTGCAGCCACTTCGGCCGCACCCCACCC TGCGCCGACGCCCTCATCCGTGCCGGCGTAGCGCGGGTGGTCGCGGCCATCGCCGACCCCAACCCCATGGTGGCCGGACA GGGCCTGGCGCGCCTGCAGGCCGCCGGCATCGAGGTCAGCTGCGGCCTGCTGGAAGAAGAAGCGCGCGACATCAATATCG GCTTCCTGCACCGCATGCGCACCGGCCGCCCCTGGGTACGCATGAAGAGCGCCGCCAGCCTGGACGGCAAGACCGCCTTG CACAATGGCGTGAGCCAGTGGATCACCGGCCAGGCCGCCCGTGACGACGGCCACATCTGGCGCGCCCGCGCCTGCGCCAT CATGGCCGGCATCGGCACCATCCAGAAGGACGACGCGCAACTGACCGTACGCGCCATCGAGACCCCGCGCCAGCCGCGCC GCATCGTCATCGACAGCAAGCTCATCGTTTCACCCGAGGCGCGGGTGATCCAGGGCGGCAACACCTGGGTCTTCACCGCC ACTGACGACCGCGACAAGCGCGCCGCCCTCGAAGCCGAGGGCGCCGAGGTGATCCTGCTGGCCAATGAGCAGGGCAAGGT CGACCTGCCCGGCCTGATGCGCGAACTAGGCCAGCGCCAGATCAATGAATTGCACGTGGAAGCCGGCGCCCGGCTCAATG GCGCATTGCTGCGCGAAGGCTGCGTGGATGAACTGCTGGTCTACCTGGCGCCGTCCCTGATCGGCGACGGCCGCAACATG TTCGAGCTGCCGCCGCTGGAAGACCTGTCGGGCAAGATCGGCATCCGTTTCCATGAGGTCAAGCAGGTCGGGGCGGATTT GCGTATCCTTGCTCGTTTCGAATGA Protein sequence : MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDVRGATVYVTLEPCSHFGRTPP CADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVSCGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTAL HNGVSQWITGQAARDDGHIWRARACAIMAGIGTIQKDDAQLTVRAIETPRQPRRIVIDSKLIVSPEARVIQGGNTWVFTA TDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLREGCVDELLVYLAPSLIGDGRNM FELPPLEDLSGKIGIRFHEVKQVGADLRILARFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00289 | YP_008207754.1 | Pyrimidine deaminase | Not tested | AbaR25 | Protein | 2e-50 | 45 |
| BJAB0868_00293 | YP_008211619.1 | Pyrimidine deaminase | Not tested | AbaR26 | Protein | 2e-50 | 45 |
