|
Name : pilB (Hsero_0357) Accession : YP_003773791.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 392892 - 394025 bp Length : 1134 bp Strand : - Note : type IV pilus assembly protein; Type 4 fimbrial biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway DNA sequence : ATGCAAGCTTCCGAGACTCCCCTGGCCGACGACGTCCCTGTCGTGCGGCTCTTGTACAAGCTCTTGGCTGATGCCGTCAG CATGGGCGCATCGGACCTGCATTTCGAACCCTTCGAACATTATTGCCGGGTGCGCCTGCGCATCGACGGGATACTGCATG AGCTGGCGCAGCCGCCGCTGAGCCTGAAGGACAAGCTGGCGACCCGGCTCAAGATCCTGGCGCGACTGGATATCGCCGAA AAGCGCCTGCCCCAGGATGGCAAGATGCGCCTGGCCCTGGAAACCCGCACAGTGGACTTTCGCGTCTCGACCCTGCCCAC GCAGTTCGGCGAGAAGATCGTGCTGCGCATCCTCGACACCGAGCAGGCCACCCTCGCGCTGGAACAGCTGGGCTACGAGC CGGCCCAGCTGCAGGCGCTGCAACAGGCCATCGCACGGCCGCATGGGATGGTGCTCATGACCGGCCCCACCGGCTCGGGC AAGACGGTCTCGCTGTATGCCTGCCTGCAGCGGCTGAACCGTCCAGGCATCAACATCGCCACTGCCGAGGATCCGGTCGA GATCAACCTGCCCGGCATCAACCAGGTCAGCATCAACGAACGCGCCGGACTGAACTTTGCGGTGGCGCTGCGGGCCTTCC TGCGGCAGGATCCGGACGTGCTGATGGTGGGCGAGATCCGCGACCTCGACACCGCCGACATCGCCATCAAGGCCGCGCAG ACCGGCCATCTGGTGCTCTCCACCCTGCATACCAATGACGCCCCGGCCACGCTCACGCGCCTGCTCAACATGGGCGTGCC GGCCTACAACATCGCCGCCTCGGTCAGCCTGATCGTGGCCCAGCGGCTGGTGCGCAGGCTGTGCAGCTGCCGCCGCCCGG CGCGCGACGCGTCGGGCAGCTTCGTGCCGCATGGCTGTCCGGCATGCAGCCATACCGGCTATCGCGGTCGCACCGGCATC TACCAGGTCATGCCGGTCAGCGCCACGATGCAGTCGCTGATCCAGGCCCAGGCCGGCACCCAGGATATCGCCCGGCAGGC CCGCGCCGAGGGTGTCATCGACCTGCGCCGCGCCGGCCTGCTCAAGGCCTTGCGCGGCGACACCAGCCTGGGAGAAGTCC TTGCCAGCACCTGA Protein sequence : MQASETPLADDVPVVRLLYKLLADAVSMGASDLHFEPFEHYCRVRLRIDGILHELAQPPLSLKDKLATRLKILARLDIAE KRLPQDGKMRLALETRTVDFRVSTLPTQFGEKIVLRILDTEQATLALEQLGYEPAQLQALQQAIARPHGMVLMTGPTGSG KTVSLYACLQRLNRPGINIATAEDPVEINLPGINQVSINERAGLNFAVALRAFLRQDPDVLMVGEIRDLDTADIAIKAAQ TGHLVLSTLHTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRRLCSCRRPARDASGSFVPHGCPACSHTGYRGRTGI YQVMPVSATMQSLIQAQAGTQDIARQARAEGVIDLRRAGLLKALRGDTSLGEVLAST |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-81 | 50 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-81 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_003773791.1 | ATPase PilB | VFG2426 | Protein | 8e-92 | 57 |
| pilB | YP_003773791.1 | ATPase PilB | VFG2048 | Protein | 1e-81 | 50 |
| pilB | YP_003773791.1 | ATPase PilB | VFG1876 | Protein | 3e-76 | 49 |
| pilB | YP_003773791.1 | ATPase PilB | VFG0182 | Protein | 1e-77 | 47 |
