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Name : Hsero_3420 (Hsero_3420) Accession : YP_003776808.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : ABC transporter ATPase Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 3921502 - 3923091 bp Length : 1590 bp Strand : - Note : - DNA sequence : ATGAGCGCCGCGCTGCTGGAAGTCAATAACCTGACGGTGCGCTTCGGCGATACCGTGGTGGTGGACCGCGTGAGCTTTGC CATAGCACCCGGGGAGAAGTTCGCCCTGGTGGGCGAATCCGGCTCAGGCAAGACCGTGTCTTCACTGGCCGTGATGCAGC TCAACCAGGACGCCCGCTACGAAGGCAGCATCCTGCTGGACGGCCAGGACGTGCTGGCCAAGAGTGAACGCCAGATGCAG CAGGTGCGCGGCAACGACGTGGCGATGATCTTCCAGGAACCGATGACGGCGCTGAACCCGCTCTTCACCATCGGCAACCA GATCGCCGAAGTGCTGATGCATCACGAAGGCCTCAACGCCCGTGACGCCGCCCGGCGCGCCGTGGCGCTGCTGGAAAAGA CCGGCATCCCCGAGCCGGCGCGCCGGGCCTTGTCCTATCCACATGAACTCTCCGGCGGCCAGCGCCAGCGCGCCATGATC GCCATGGCCCTGGCCTGCAAGCCCAAGCTGCTGATCGCCGACGAACCGACCACGGCCCTGGACGTGACCATCCAGGTGCA GATCCTGGCGCTGCTGAACCAGTTGCAGCGCGAAGAGAACATGGCCGTGCTCATCATCTCGCACGACCTGAACCTGGTGC GCCACTTCGCCGACCGCGTCGGCGTGATGGAGAAGGGCAAGCTGGTGGAAAGCGCCAGCGTGGCCGAGCTGTTCGCCAAT CCGCAGCAGCCTTACACACGCAAGCTGTTGCAGAGCCGGCCGCAACGCAATGCGGCCGACGTGGCAGCCGATGCGCCCGT GGTCTTGCAGGCAGAAAGGCTGCGCTGCACCTATCACATCAAGCAGGGCTGGTTCGCCAAGCGCGCCTTCCATGCCGTCG ATGGCGTCGACCTGCAATTGCGCCGGGGCGAAACCCTTGGCATCGTCGGTGAATCCGGTTCCGGCAAGTCCACCCTGGGC ATGGCCTTGCTGCGGCTGTCAGCGGCCAGCGTGGCGGGCAGCATCCGCTTCGACGGCGTGCCCATTTCCGAGCGCCCACA GCGCGAGCTGCGGCCTTTGCGCTCGCGCATGCAGGTGGTGTTCCAGGATCCGTTCGCCTCGCTCTCGCCGCGCCGTACGG TCGAGCAGATCGTCGGCGAAGGCTTGGAGCTGCATCATCCCGACAGAAGCGCCGAGCAGCAGCGCCAGGCCATCGTCGCC GCGCTGGAAGAGGTCGGCTTGAGCGCCGCCGTGCTGGAACGTTATCCCCATGAATTCTCCGGCGGCCAGCGCCAGCGCAT CGCCATCGCCCGTGCGCTGGTGCTGCAACCCGAGCTGCTGCTGCTGGATGAGCCCACCTCGGCGCTGGATGTGACTGTGC AGCAGCAGGTGCTGCAACTGCTGGCCGAATTGCAGCGCCGGCATGGACTGGCCTATCTCTTCATCACCCACGACCTGGCC GTGGTGCAAGCCATGGCGCACCAGGTGATCGTGATGAAGGATGGCAAGGTGGTCGAGAGCGGCGCCACCGCCCAGGTGCT GCAGCAACCGCAGCAGGAATACACGCGCCGGCTGGTGGCGGCTGCCACCTACGCCGAAGCGGCCCCCTGA Protein sequence : MSAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKSERQMQ QVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMI AMALACKPKLLIADEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFAN PQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLG MALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVA ALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLA VVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLVAAATYAEAAP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 8e-74 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 8e-74 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 8e-74 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 8e-74 | 43 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 5e-84 | 41 |
