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Name : lysS (Hsero_2786) Accession : YP_003776189.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3184639 - 3186180 bp Length : 1542 bp Strand : + Note : - DNA sequence : ATGACCACGCAAAACACCCCCGCCGCCCAGCCGGCAGCCGACGAGAACAGCATCATCGCCGAGCGCCGCGCCAAGCTGGC GGCCATCCGCGAACAGGGCGTCGCCTTCCCCAACGACTTCCGTCCGGCCAACCAAGCCGCCGACCTGCATGCCAAGTACG ACGGTTTCGAGAACGAAGCCCTGGAAGCCGAGCCGGTCACCGTCACCGTCGCCGGTCGCATGATGTTGAAGCGGGTCATG GGCAAGGCGGCCTTCGCCACCCTGCAGGATGCCTCGGGCGTGCGCGCCGATGGCCGCATCCAGCTCTACATCACCCGCGA CGTCACCGGCGAAGAAGCCATGGCCGCCTTCAAGCACTATGACCTGGGCGACATCCTGGGCGCCGAAGGTACGCTGTTCA AGACCAAGACCGGCGAACTGTCGGTGAAGGTCACCAAGTTGAAGCTCATCACCAAGTCGCTGCGCCCGCTGCCGGACAAG TTCCACGGCCTGGCCGACCAGGAAATGAAGTACCGCCAGCGCTACGTCGACCTGATCATGAGCGAAGAGACCCGCCGCAC CTTCAAGGCGCGTACCGCTGCGATGTCGTCGATCCGCCGCTTCATGGAAACCCATGGCTTCATGGAAGTGGAAACCCCGA TGCTGCACCCGATCCCGGGCGGCGCGGCGGCCAAGCCCTTCATCACCCACCACAATGCGCTGGACATGCAGATGTTCATG CGTATCGCCCCCGAGCTGTACCTGAAGCGCCTGGTGGTGGGCGGCTTTGAGCGCGTCTTCGAGATCAACCGCAATTTCCG CAATGAAGGTGTGTCGCCGCGTCACAACCCGGAATTCACGATGATGGAGTTCTACGCCGCCTACGTGGATTACCAGTGGC TGATGGGCTTCACCGAACAGGTGATCCGCCAGGCCGCCATCGATGCGCACGGCACCGCCGTATTGAGCTACCAGGGCCGC GAGCTGGACCTGTCCAAGCCCTTCGACCGCCTGACCATCACCGGCGCGATCCTGAAGTACGCGCCCAACTACACCGAGGC GCAACTGGCCGACATCGACTTCCTGCGCACTGAACTGAAGAAGTTCGGCGTCAAGACCGACCAAGCCCCGCTGGCCGGCG CTGGCATCGGCGCGCTGCAACTGGCGCTGTTCGAAGAGACCGCCGAGTCGCAGCTGTGGAATCCGACCTACATCATCGAC TACCCGGTCGAAGTCTCGCCGCTGGCGCGCGCTTCCGACACTGTGGCCGGCATCACCGAGCGCTTTGAACTCTTCATCAC GGGTCGCGAGATCGCCAACGGCTTCTCCGAGTTGAATGACGCCGAAGACCAGGCCGCCCGCTTCCACGCCCAGGTGGCGG CCAAGGACGCTGGCGACGAAGAAGCCATGTACTACGACGCCGACTACATCCGTGCGCTGGAATACGGCATGCCGCCGGCT GGTGGCTGCGGCATCGGTATCGACCGCCTGATGATGCTCATCACCGACTCGCCCAATATCCGTGACGTGATCCTGTTCCC GCACCTGCGTCGCGAAGATTGA Protein sequence : MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEALEAEPVTVTVAGRMMLKRVM GKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAFKHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDK FHGLADQEMKYRQRYVDLIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQVIRQAAIDAHGTAVLSYQGR ELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIID YPVEVSPLARASDTVAGITERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-133 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003776189.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-133 | 56 |
