Gene Information

Name : galE (Hsero_2737)
Accession : YP_003776141.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 3121140 - 3122183 bp
Length : 1044 bp
Strand : +
Note : -

DNA sequence : 
ATGACACGATACGACACGCTCTGCGAGCAACTGCCCCAGCATCCCAAGCGCTGGCTCATCACCGGCGTGGCCGGCTTCAT
CGGCTCCAACCTGCTGGCGCGCCTGCTCACGCTGGGCCAGCAGGTGACCGGCCTGGACAACTTCAGCACCGGCCGCCAGG
CCAACCTGGAGGAGGTGCGCGCCGAAGTGGGCGCGGCCGCCTGGGCCAACTTCCGCTTCATCGAAGGCGATATCTGCGAT
GCCGCTACCTGCCTGCGCGCCTGCGACGGCGCCGACTATGTGCTGCACCAGGCGGCGCTGGGTTCGGTGTCGCGCTCCAT
CGAAGATCCGGTGCGCACCAACCTGAACAACGTCAACGGTTTCCTCAACATGCTGGTGGCCGCGCGCGATGCGGGCGTGG
CGCGCTTCGTCTATGCCGCCTCCAGTTCCACCTATGGCGACCATCCCGGCCTGCCCAAGGTGGAAGAGGTGATCGGCAAG
CCGCTCTCGCCCTATGCCGTGACCAAGTATGTCAATGAACTGTACGCCGAGGTCTTTGCCCGCTGCTATGGCATGGAGAG
CATCGGCCTGCGCTACTTCAACGTCTTCGGCCGCCGCCAGGACCCGCACGGCGCCTATGCCGCGGTGATCCCGCAATGGG
TGACGGCGATGATCCGCAATGGCGAACTGCGCATCAATGGCGATGGCCAGACCAGCCGCGATTTCTGCTACATCGACAAT
GTCGTGCAAGCCAACCTGCTGGCCGCCACCGCCGGCGAGGAAGCGGTCAACCAGGTCTACAACGTGGCCCTGAACGACCG
CACCAGTCTCAACGATTTGTACGCGATGATGCGCGAACTGCTGGTGCAGCGCTTCCCGCATCTGCAAGAGCACCGGCCCA
GCTATGTGGGATTTCGCGCCGGCGACATCCGCGACTCCCAGGCCGACATCGGCAAGGCGCGCCAGCGCCTGGGCTATGCG
CCTACCCATCGCCTGCGCGCCGGGCTGGAGCAGGCCATGTCCTGGTACATCGATCACCTGGGCAGCACTGCCTGCAACAC
CTGA

Protein sequence : 
MTRYDTLCEQLPQHPKRWLITGVAGFIGSNLLARLLTLGQQVTGLDNFSTGRQANLEEVRAEVGAAAWANFRFIEGDICD
AATCLRACDGADYVLHQAALGSVSRSIEDPVRTNLNNVNGFLNMLVAARDAGVARFVYAASSSTYGDHPGLPKVEEVIGK
PLSPYAVTKYVNELYAEVFARCYGMESIGLRYFNVFGRRQDPHGAYAAVIPQWVTAMIRNGELRINGDGQTSRDFCYIDN
VVQANLLAATAGEEAVNQVYNVALNDRTSLNDLYAMMRELLVQRFPHLQEHRPSYVGFRAGDIRDSQADIGKARQRLGYA
PTHRLRAGLEQAMSWYIDHLGSTACNT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 5e-101 61
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 5e-101 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
galE YP_003776141.1 UDP-glucose 4-epimerase VFG0430 Protein 2e-101 61