Gene Information

Name : Hsero_2435 (Hsero_2435)
Accession : YP_003775842.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : transcription response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2763406 - 2764068 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
ATGAGAATACTGTTGGTCGAAGATGACGCCATGATCGGCGAAGAAGTCCGTTGCGCCTTGAAGGACAACGGCTACGCGGC
CGACTGGGTCCGTGCTGGCGACGCCGCCCTGCTGGCGCTGGCGCAGCAGCAATACGACGCGCTGTTGCTGGACCTGGGCC
TGCCCGGCGCCGATGGCCTGGCGGTGCTACGCCAGTTGCGCACCCATTCCCTGCTGCCGGTCCTGGTCATCACTGCCCGC
GACGGTATCCAGGACCGCATCGGCGGGCTCGACGCCGGCGCCGATGACTATCTGCTCAAACCCTTTGCCATCGGTGAATT
GCTGGCGCGCCTGCGCGCCGTGCTGCGACGCCGCTCGGGCGCGGCCAGCGACCAGCTCTCCAATGGCCAGATCACGCTCG
ACCTGGCCGCCAAGACCGCCTGCTGGCGCGAGGGTCCCGCGGTGCTCTTGTCGGCACGTGAGTTCGCCTTGCTGTGTGCG
CTCATGGGCCGTCCTGGCGCCATCCTCTCGCGCGCCGAACTGGAAGAAAAACTCTATGGCTGGGGCGAGGAAGTCGAAAG
CAATGCGGTCGAATTCCTGATCCATTCGCTGCGCCGGAAACTGGACAAGGAAGCCATCAAGAACGTCAGGGGCATGGGAT
GGCTGGTCCAGCGGGCGTCATGA

Protein sequence : 
MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLRQLRTHSLLPVLVITAR
DGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASDQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCA
LMGRPGAILSRAELEEKLYGWGEEVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-21 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-15 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-15 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_2435 YP_003775842.1 transcription response regulator protein BAC0197 Protein 2e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_2435 YP_003775842.1 transcription response regulator protein VFG0473 Protein 1e-25 44
Hsero_2435 YP_003775842.1 transcription response regulator protein VFG0596 Protein 7e-16 42
Hsero_2435 YP_003775842.1 transcription response regulator protein VFG1390 Protein 7e-15 41