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Name : clpB (Hsero_2110) Accession : YP_003775518.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 2371225 - 2373810 bp Length : 2586 bp Strand : + Note : - DNA sequence : ATGCGTCTCGACAAACTCACCACCAAATTGCAGGAAGCGCTGGCCGATGCGCAATCCCAGGCCGTCGGCCACGACAATCA ATACATCGAACCCGTCCACCTCATCCTGGCGCTGCTGAACCAGGAGGACGGCGGCGCTCGCTCGCTGCTGCAGCGCGCCG GCGTGAACGTCAATGGTCTGTCTGCCGCCTTGCAGGCGGCCGTCAAGCGCCTGCCGCAGGTCTCCGGCAATGGCGGCGAA GTGCAGGTCGGCCGCGAGCTGGTGGCCCTGCTGAACCTGGCCGACAAGGAAGCGCAAAAGCATGGCGACCAGTTCGTCGC CAGCGAAATGGTGCTGCTGGGCCTGGTGGACGACAAGTCCGACGCCGGCCGCGCCGCGCGCGAAAACGGTCTGACCCGCA AGTCGCTGGAAGCGGCCATCACCGCCGTGCGCGGTGGCGCGTCCGTGTCCTCGCAGCAAGATGAAGGCCAGCGCGAAGCC CTGAAGAAATACACCCTGGACCTGACCGAGCGTGCCCGCGCCGGCAAGCTCGACCCGGTGATCGGCCGCGACGATGAAAT CCGCCGCGCCATCCAGGTGCTGCAACGGCGCAGCAAGAACAACCCGGTCCTGATCGGGGAGCCGGGCGTGGGCAAGACCG CCATCGTCGAAGGCCTGGCCCAGCGCATCGTCAATGGCGAAGTGCCGGACAGCCTCAAGTCCAAGCGCGTGCTGTCGCTG GACATGGCGGCCCTGCTGGCGGGCGCCAAGTATCGCGGCGAATTCGAGGAACGCCTGAAAGCGGTCTTGAAGGAAATCGC CCAGGACGAAGGCCAGACCATCGTCTTCATCGATGAGTTGCATACCATGGTCGGCGCCGGCAAGGCCGAGGGCGCCATGG ACGCCGGCAACATGTTGAAGCCGGCCCTGGCGCGCGGCGAACTGCACTGCGTGGGCGCCACCACCCTGGATGAATACCGC CAGTACATCGAGAAAGATGCCGCGCTGGAACGCCGCTTCCAGAAGATCCTGGTGGATGAGCCCAGCGTGGAAGCCACCAT CGCCATCCTGCGCGGTCTGCAGGAAAAGTACGAGGTGCACCACGGCGTGGACATCACCGACCCGGCCATCGTGGCTGCGG CCGAGCTGTCGCATCGCTATATCACCGACCGCTTCCTGCCGGACAAGGCCATCGACCTGATCGACGAAGCGGCTTCCAAG ATCAAGATCGAAATCGATTCCAAGCCGGAAGTGATGGACAAGCTCGACCGTCGCCTGATCCAGTTGAAGATCGAGCGCGA AGCCGTCAAGCGCGAGAAGGACGAAGCCTCGCAGAAGCGCCTGCAGCTGATCGAGGAAGAAATCGAGAAGCTCGAGCGCG AATACGCCGACCTGGAAGAAATCTGGAAGGCCGAGAAGTCGAGCGCCCAGGGCGGCCAGCAATTGAAGGAAGAAATCGAG AAGGTGCGCCTGCAGATGGAAGAGGCCACCCGCAAGAGCGACTGGCAGAAGGTCTCGGAACTGAAGTACGGCAAGCTGGC CGAGCTGGAAGCCGCGCTGGAAGTGCAGAACAAGAAGGATGCGGCGGGCGTCAAGACCGAGAAGCCCAAGCTGGTGCGCA CGCAGGTGGGCGCTGAGGAAATCGCCGAGATCGTCGCGCGCGCCACTGGCATTCCGGTCTCGCGGATGATGCAGGGCGAA CGCGAAAAACTGCTGCACATGGAAGACGTGCTGCATGAACGCGTGGTCGGCCAGGACGAAGCCATCGTGGCCGTCTCCGA CGCCATCCGCCGTTCCCGTGCCGGCCTGGGCGATCCCAGCAAGCCCTATGGTTCCTTCATGTTCCTGGGCCCCACCGGGG TGGGCAAGACCGAGCTGTGCAAGGCGCTGGCCTCCTATCTCTTCGATACCGAGGAAGCCATGATCCGCATCGACATGAGC GAATTCATGGAGAAGCATTCCGTGGCCCGCCTGATCGGCGCGCCGCCGGGCTATGTCGGCTATGAAGAGGGCGGTTACCT GACCGAAGCGGTGCGTCGCAAGCCCTACAGCGTGATCCTGCTCGACGAAATCGAGAAGGCCCACCCGGATGTCTTCAACG TGCTGCTGCAGGTGCTGGACGATGGCCGCATGACCGATGGCCAGGGCCGTACCGTGGACTTCAAGAACACCGTGATCGTG ATGACTTCCAACCTGGGTTCGCACAAGATCCAGAGCATGGAAGACAGCGATCCGGCCCTGGTGAAGCTGGCCGTGATGGC CGAGGTGCGCACCCACTTCCGTCCGGAATTCATCAACCGGGTGGATGAGATCGTGGTCTTCCACGCGCTGGACGCCAAGA ACATCGGCGCCATCGCCAAGATCCAGCTGCGCATCCTGGAGCAACGCCTGGCCAAGCTGGAGATCGGCCTGGAGATCAGC GAGGCCGGTTTGCAGAAGATCGCCGAGGCTGGTTTCGATCCGGTCTATGGCGCTCGTCCGCTCAAGCGCGCCATCCAGCA GGAGATCGAGAACCCGCTGTCCAAGCAGATCCTGGCAGGCAAGTTCGGTCCCAAGGATGTGGTGCGGGTGGACGTGGACC ATGGCCAGTTGAGTTTCAGCAAGTAA Protein sequence : MRLDKLTTKLQEALADAQSQAVGHDNQYIEPVHLILALLNQEDGGARSLLQRAGVNVNGLSAALQAAVKRLPQVSGNGGE VQVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDKSDAGRAARENGLTRKSLEAAITAVRGGASVSSQQDEGQREA LKKYTLDLTERARAGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSL DMAALLAGAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASK IKIEIDSKPEVMDKLDRRLIQLKIEREAVKREKDEASQKRLQLIEEEIEKLEREYADLEEIWKAEKSSAQGGQQLKEEIE KVRLQMEEATRKSDWQKVSELKYGKLAELEAALEVQNKKDAAGVKTEKPKLVRTQVGAEEIAEIVARATGIPVSRMMQGE REKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKTELCKALASYLFDTEEAMIRIDMS EFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV MTSNLGSHKIQSMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEIGLEIS EAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVRVDVDHGQLSFSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-103 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_003775518.1 | ATP-dependent Clp protease subunit | VFG0079 | Protein | 1e-160 | 46 |
