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Name : dnaB (Hsero_2078) Accession : YP_003775486.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 2337633 - 2339069 bp Length : 1437 bp Strand : + Note : - DNA sequence : ATGAAAGAATCGTCCCGCGGCAATCCAGAATTTTTCCGTGGCCAGAAGGAGTCCTCCGATCCCCAGATCGACGCGCTCCG CGTGCCGCCACACTCCATCGAGGCCGAGCAGTCGGTGCTGGGCGGCCTGCTGCTGGATAACGCGGCCTGGGACCGCATCG CCGACTTCGTCAGCGCCGAGGACTTCTACCGCTACGATCACCGCATCATCTTCGAGCACATCGTCAAGCTCATCAACAGC ACCAAGCCGGCTGACGTCATCACCGTCTACGAGGCCATGTCCACCAGCGGCAAGGCCGAAGAGGTGGGCGGCCTGGTGTA CCTGAACGCGCTGGCGCAAAATACGCCTTCAGCGGCCAACATCCGCCGCTATGCCGAGATCGTCCGTGATCGCGGCATCC TGCGCAAGCTCATCACGGTGGCCGACGAAATCTCCGGCAATGCCTTCAATCCGCAGGGCAAGGATGTGAAGTCCATGCTG GATGAGGCCGAATCCAAGATCTTCGCCATTGCTGAAGAAGGTTCGCGCGGCTCGCAGGGCTTCATGGAAATCCAGCCGCT GTTGACGCAAGTGGTCGAGCGCATCGATGAGCTCTACAACCGCGACAGCTCCAGCGATATCACCGGTGTGCCCACCGGCT TCATGGACCTGGACAAGATGACTTCCGGCCTGCAGCCAGGCGACCTGATCATCGTGGCCGGTCGTCCCTCCATGGGCAAG ACCGCGTTCTCGATCAACATTGGCGAACACGTCGCCATCGAATCGGGCCTGCCTGTAGCGGTGTTTTCGATGGAAATGGG CGGCGCCCAGCTGGCCATGCGTATGCTGGGCTCGGTCGGCCGCCTGGACCAGCACCGCCTGCGTACCGGTCGCCTGCTCG ATGAGGACTGGCCGCGCCTGACGCACGCCATCCAGAAGATGAACGATGCCCAGTTCTACATCGACGAAACGCCGGCCCTG TCGCCCATCGAATTGCGCGCACGCTCGCGCCGCCTGGCCCGCCAATGCGGCAAGCTGGGCCTGATCATCATCGACTACCT GCAGCTGATGTCGGGCAACGGCGGCAGCTCTTCCGAAAACCGCGCCTCTGAAATCTCGGAAATCTCGCGGAGCTTGAAGG GCCTGGCCAAGGAGCTCAATTGCCCGGTCATTGCCCTGTCGCAGCTGAACCGCTCGCTGGAACAACGCCCCAACAAGCGC CCCGTGATGTCCGACTTGCGCGAATCGGGCGCCATCGAGCAGGATGCTGACGTTATTTTGTTCATCTACCGTGATGAAGT TTACAATCCTGACTCTCCCGACAAGGGGACGGCGGAAATCATCATCGGCAAGCAGCGTAATGGTCCGATTGGCAGCATTC GCCTCTCGTTTCTGGGGATGTATACCAAGTACGACAACTACATCGGTAATCTGGCGCAACCCTACGGCGGCGACTGA Protein sequence : MKESSRGNPEFFRGQKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAEDFYRYDHRIIFEHIVKLINS TKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAANIRRYAEIVRDRGILRKLITVADEISGNAFNPQGKDVKSML DEAESKIFAIAEEGSRGSQGFMEIQPLLTQVVERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGK TAFSINIGEHVAIESGLPVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKMNDAQFYIDETPAL SPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKR PVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIGNLAQPYGGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 3e-104 | 53 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-92 | 49 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 5e-92 | 49 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 1e-91 | 48 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 1e-91 | 47 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 5e-90 | 47 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-87 | 45 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-87 | 45 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 2e-74 | 43 |
