|
Name : kdsB (Hsero_1170) Accession : YP_003774595.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 1335557 - 1336372 bp Length : 816 bp Strand : + Note : - DNA sequence : ATGAGCTTCACCGTCATCATCCCGGCGCGCCTGGCTTCCACGCGCCTGCCCAACAAGCCCCTGGCCGACCTGGGCGGCAA GCCCATGATCGTGCGGGTGGCCGAGCGCGCAGCCCAGTCGGGTGCGGCGCGCATCATCGTGGCCACCGACCATCATGACA TCCATGCGGCCTGCCAGGCCCATGGGGTGGAAGTGGCCATGACCCGCGCCGACCATCCCTCCGGCACCGACCGCATCGCC GAAGTGGCGGCCGCGCTGGACCTGGCCGAGGATGCGGTGGTGGTCAACGTGCAGGGCGATGAACCGCTGATCGATCCGGG CCTCATCGCCGCCACGGCGGCCCACATCAAGCCCGGCGTGCCCATGGCCACGGCCGCGCATGCCATCGAGAGCGCCGCCG ATGCCTTCAATCCCAACGTGGTCAAGGTGGTGTTGAACAAGGAAGGTTGCGCCATGTACTTCTCGCGCGCCACCATTCCC TGGCACCGCGATGCCTTCGCCCAGTCGCGCGAGGTCTTGCCTGACGCCAGCGGTCCCGACCACGCCAACGAATACGTGCC GCTGCGCCATATCGGCCTGTACGCCTACAGCAACCGCTTCCTGCAGCTCTATCCCACGCTCTCGCCGTCGCCGGTGGAAC GCATCGAGGCGCTCGAACAGCTGCGCGTGCTCTGGCATGGCCACGCCATCGCCGTGCACGTGACCTCGCTGCTGCCCGAG GCCGGGGTGGATACCCCCGAGGATTTGTTGCGCGTGCGCAAGCATTTCGAGGCTCCGCCCGACAGTCCCCTGGTGCAGAC CATTTCGTCCCTCTGA Protein sequence : MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAAQSGAARIIVATDHHDIHAACQAHGVEVAMTRADHPSGTDRIA EVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAAHIKPGVPMATAAHAIESAADAFNPNVVKVVLNKEGCAMYFSRATIP WHRDAFAQSREVLPDASGPDHANEYVPLRHIGLYAYSNRFLQLYPTLSPSPVERIEALEQLRVLWHGHAIAVHVTSLLPE AGVDTPEDLLRVRKHFEAPPDSPLVQTISSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 5e-27 | 42 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 2e-26 | 42 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 4e-27 | 42 |
