Gene Information

Name : yycF (LEGAS_0308)
Accession : YP_003771775.1
Strain : Leuconostoc gasicomitatum LMG 18811
Genome accession: NC_014319
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 309979 - 310686 bp
Length : 708 bp
Strand : +
Note : -

DNA sequence :
ATGAGTAAAATTTTGGTTGTGGATGATGAGAAACCAATCTCAGATATCATTAAATTTAATTTAACCAAAGAAGGATACGA
AGTGGTAACAGCAGCTGATGGTCAGGAAGCGTTGACAGTGTTCAATGAAGAAAAGCCTGACCTTGTTTTGCTTGACCAAA
TGTTGCCTGAGATTGATGGTGTTGAAGTGTTGCGCCAAATTCGTTCAAAATCAGAAACACCTGTTATTATGGTAACAGCT
AAAGATTCTGAAATTGACAAAGTACTAGGTTTAGAAATGGGTGCTGACGACTATGTCACAAAACCATTCTCAAATCGTGA
ATTAGTTGCACGTGTCAAAGCTAATTTACGTAGCCGTAAAGCGGTTGCACAACATATTGATGAGTCTGTTGTGAATACCG
ACGACATCGAGCTAGGCGATTTGACAATACATCCGCAAGCATATATGGTGTCAAAGGCTGGACAAGATATTGAATTAACA
CATCGAGAATTCGAACTGCTTTATTATTTAGCACAACACATTAGTCAAGTGATGACACGTGAACATTTGTTGCAACAAGT
TTGGGGCTATGACTATTTTGGAGATGTCCGAACGGTAGATGTTACTGTGCGTCGCTTGCGTGAAAAAATTGAAGATAATC
CAAGTCATCCTAATTGGTTGGCAACGCGTCGTGGGGTAGGATATTATTTGCGTCCTGACGCAGAGTAA

Protein sequence :
MSKILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDGVEVLRQIRSKSETPVIMVTA
KDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKAVAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELT
HREFELLYYLAQHISQVMTREHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-33 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_003771775.1 two-component response regulator NC_012469.1.7685629. Protein 2e-68 67
yycF YP_003771775.1 two-component response regulator NC_002745.1124361.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_009782.5559369.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_002951.3237708.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_003923.1003749.p0 Protein 3e-47 51
yycF YP_003771775.1 two-component response regulator NC_002758.1121668.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_009641.5332272.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_013450.8614421.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_007793.3914279.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator NC_007622.3794472.p0 Protein 3e-47 51
yycF YP_003771775.1 two-component response regulator NC_002952.2859905.p0 Protein 4e-47 51
yycF YP_003771775.1 two-component response regulator HE999704.1.gene2815. Protein 1e-47 50
yycF YP_003771775.1 two-component response regulator NC_012469.1.7686381. Protein 3e-42 48
yycF YP_003771775.1 two-component response regulator AE016830.1.gene1681. Protein 1e-42 45
yycF YP_003771775.1 two-component response regulator AE000516.2.gene3505. Protein 2e-35 45
yycF YP_003771775.1 two-component response regulator CP000034.1.gene3834. Protein 1e-33 44
yycF YP_003771775.1 two-component response regulator CP001138.1.gene4273. Protein 1e-33 44
yycF YP_003771775.1 two-component response regulator NC_002695.1.915041.p Protein 1e-33 44
yycF YP_003771775.1 two-component response regulator AF155139.2.orf0.gene Protein 2e-37 44
yycF YP_003771775.1 two-component response regulator CP000647.1.gene4257. Protein 7e-34 43
yycF YP_003771775.1 two-component response regulator BAC0533 Protein 7e-34 43
yycF YP_003771775.1 two-component response regulator CP001918.1.gene5135. Protein 6e-29 43
yycF YP_003771775.1 two-component response regulator FJ349556.1.orf0.gene Protein 2e-38 43
yycF YP_003771775.1 two-component response regulator NC_003923.1003417.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_013450.8614146.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_002951.3238224.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_007793.3914065.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_002758.1121390.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_010079.5776364.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_002952.2859858.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator NC_007622.3794948.p0 Protein 8e-35 43
yycF YP_003771775.1 two-component response regulator CP004022.1.gene3215. Protein 1e-37 42
yycF YP_003771775.1 two-component response regulator AE015929.1.gene1106. Protein 1e-30 42
yycF YP_003771775.1 two-component response regulator HE999704.1.gene1528. Protein 1e-30 41
yycF YP_003771775.1 two-component response regulator AF162694.1.orf4.gene Protein 4e-32 41
yycF YP_003771775.1 two-component response regulator AM180355.1.gene1830. Protein 1e-36 41
yycF YP_003771775.1 two-component response regulator NC_010410.6002907.p0 Protein 7e-23 41
yycF YP_003771775.1 two-component response regulator NC_011586.7046392.p0 Protein 7e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_003771775.1 two-component response regulator VFG1389 Protein 7e-32 44
yycF YP_003771775.1 two-component response regulator VFG1563 Protein 7e-34 42
yycF YP_003771775.1 two-component response regulator VFG1702 Protein 9e-34 42
yycF YP_003771775.1 two-component response regulator VFG1386 Protein 3e-31 41