|
Name : clpC (AMED_8729) Accession : YP_003770824.1 Strain : Amycolatopsis mediterranei U32 Genome accession: NC_014318 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 9570545 - 9573040 bp Length : 2496 bp Strand : - Note : - DNA sequence : ATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTGGGTCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGC GCTGGAGTCGCTGGGCATCGCCCTGGAGGGCGTGCGCCAGCAGGTCGAAGAGATCATCGGCCAGGGCCAGCAGGCGCCGA GCGGGCACATCCCGTTCACGCCGCGCGCCAAGAAGGTGCTGGAGCTGTCACTGCGCGAAGCGCTGCAGCTCGGCCACAAC TACATCGGCACCGAGCACATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCGCAGGTCCTGGTCAAGCTGGG AGCGGACCTCAACCGGGTTCGCCAGCAGGTGCTGCAGCTGCTCTCGGGCTACCAGGGCGGCAAGGAGTCCACCGAAACCG GTTCCGGCCGCGGTGAGGGCACCCCGTCGTCGTCGCTGGTCCTCGACCAGTTCGGCCGCAACATGACCGTGCTCGCCCGC GAGGGCAAGCTCGACCCGGTCATCGGGCGCGGCAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAA CAACCCGGTGCTCATCGGCGAGCCGGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGAGCATCGTCAAGGGCG AGGTGCCCGAGACGCTCAAGGACAAGCAGCTCTACACGCTGGACCTGGGCTCGCTGGTCGCCGGCTCCCGCTACCGCGGT GACTTCGAAGAGCGCCTGAAGAAGGTGCTCAAGGAGATCAAGACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCA CACGCTGGTCGGGGCGGGTGCCGCCGAGGGCGCGATCGACGCGGCTTCGATCCTGAAGCCGATGCTCGCCCGCGGTGAGC TGCAGACGATCGGCGCGACCACGCTCGAGGAGTACCGCAAGTACATCGAGAAGGACGCCGCCCTCGAGCGCCGGTTCCAG CCGATCCAGGTCGGCGAGCCGTCGCTGGAGCACACCATCGAGATCCTCAAGGGCCTGCGTGACCGGTACGAGGCGCACCA CCGCGTCTCGATCACCGACTCGGCGCTGGTCGCCGCCGCGACCCTGGCGGACCGGTACATCAACGACCGGTTCCTCCCGG ACAAGGCGATCGACCTGATCGACGAGGCCGGCGCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAG TTCGACGAGAAGATCGCGAACGTCCGCCGCGACAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGCGGGCCGCCCGCCT GCGCGACGAGGAGAAGACCCTCCTCGGCCAGAAGGGCGAGCGGGAGAAGCAGTGGAAGGACGGCGACCTCGACGTCGTCG CCGAGGTCGACGACGAGCAGATCGCGGAGGTGCTGGCCAACTGGACCGGCATCCCGGTGTTCAAGCTGACCGAGGAGGAG ACCACCCGGCTGCTGCGCATGGAGGAGGAACTCCACAAGCGCATCATCGGCCAGGAGGACGCGGTCAAGGCCGTCTCGCA GGCGATCCGCCGTACGCGGGCCGGTCTGAAGGACCCGAAGCGCCCGTCGGGCTCGTTCATCTTCGCCGGCCCGTCCGGTG TCGGTAAGACCGAGCTCTCCAAGGCGCTGGCGGCGTTCCTGTTCGGCGAGGACGACGCGCTCATCCAGATCGACATGGGC GAGTTCCACGACCGCTACACCGCTTCGCGGCTCTTCGGTGCCCCTCCGGGCTACGTCGGCTACGAAGAGGGCGGCCAGCT GACCGAGAAGGTGCGGCGCAAGCCGTTCTCGGTGGTCCTGTTCGACGAGATCGAGAAGGCGCACCAGGAGATCTACAACA CGCTCCTGCAGGTGCTGGAAGACGGCCGCCTGACCGACGGTCAGGGCCGCACGGTCGACTTCAAGAACACGGTCCTCATC TTCACGTCCAACCTGGGCACGTCGGACATCTCGAAGTCCGTCTCGCTCGGGTTCGCCGGGTCCAACGACACCGGCACCCG GTACGAGAAGATGAAGCAGAAGGTCAACGAGGAAATGAAGAAGCATTTCCGCCCGGAGTTCCTGAACCGGATCGATGACA TCATCGTGTTCCACCAGCTGACGCAGGAACAGATCATCATGATGGTCGACCTGATGATCGGCCGGGTCGAGACCCAGCTG CGCGCCAAGGACATGGAGCTGGAGCTCACGGCGAAGGCCAAGTCGCTGCTGGCCAAGCGCGGCTTCGACCCCGTGCTGGG TGCGCGGCCGCTGCGCCGCACGATCCAGCGCGAGATCGAGGACCAGCTGTCGGAGAAGATCCTCTTCGGCGAGGTCGAGC CGGGCCAGATCATCCTGGTCGACGTCGAAGGCTGGAGCGGCAACCCGGAGGACAAGGACGACCAGGCGAAGTTCACCTTC CGCGGTGAGCGCCGTCCGTCGTCCATCCCGGACGCCCCGCCGGTCAGCATCGGCGCGGGCCACGAGGAGCAGGGCGGCGA AGCCGAAGGCGAGTGA Protein sequence : MLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVRQQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHN YIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSGYQGGKESTETGSGRGEGTPSSSLVLDQFGRNMTVLAR EGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQSIVKGEVPETLKDKQLYTLDLGSLVAGSRYRG DFEERLKKVLKEIKTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLEEYRKYIEKDAALERRFQ PIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLRE FDEKIANVRRDKESAIDAQDFERAARLRDEEKTLLGQKGEREKQWKDGDLDVVAEVDDEQIAEVLANWTGIPVFKLTEEE TTRLLRMEEELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAAFLFGEDDALIQIDMG EFHDRYTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVLEDGRLTDGQGRTVDFKNTVLI FTSNLGTSDISKSVSLGFAGSNDTGTRYEKMKQKVNEEMKKHFRPEFLNRIDDIIVFHQLTQEQIIMMVDLMIGRVETQL RAKDMELELTAKAKSLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFGEVEPGQIILVDVEGWSGNPEDKDDQAKFTF RGERRPSSIPDAPPVSIGAGHEEQGGEAEGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 79 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003770824.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_003770824.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 8e-143 | 50 |
