Gene Information

Name : gabD (AMED_7877)
Accession : YP_003769985.1
Strain : Amycolatopsis mediterranei U32
Genome accession: NC_014318
Putative virulence/resistance : Unknown
Product : succinate-semialdehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 8665540 - 8667003 bp
Length : 1464 bp
Strand : -
Note : -

DNA sequence :
ATGAGCGCGAACACCGAGTCCGGCGTCGTCGAGGCGGTCGGCAAGGAACTGTTCATCGGCGGCAAGTGGGTCGCCGCCCA
GGACGGCAAGACCTTCCCGGTGGTGGACCCGGCCACCGGCAAGGAGCTTTGTCACGTCGCCGACGCCTCGCCGTCGGACG
GCGTCGCGGCGCTGGACGCCGCCGTCGCGGCGCAGACCGAGTTCGCGAAGATGGCGCCCCGCGAGCGCGGCGAGATCCTG
CGCCGCGCCTACGAGCTGCTGATGCGGCGCCAGGAGGAACTGGCGCTGCTGATGACCCTGGAGATGGGCAAGCCGCTCGC
CGAGTCGAAGGGCGAGATCGCCTACGCCGCGGAGTTCTTCCGCTGGTTCGCCGAGGAAGCCGTCCGCATCGACGGCGGCT
ACGCGACCGCCCCGAACGGCGCGGGCCGGTTTCTCATCACCAAGCAGCCGGTCGGGCCGACGTTGCTGATCACGCCGTGG
AACTTCCCGATGGCGATGGGCACCCGCAAGATCGGCCCGGCGATCGCCGCCGGCTGCACGGCGGTGATCAAGCCCGCCGC
CCAGACGCCGCTGTCGATGCTCGCGCTGGCGGGAATCCTCGCCGAGGCGGGACTGCCCGAAGGCGTGCTCAACGTCGTCA
CGACCAGCGACTCCGGCGGCGTGATGGAGCCGCTGATCCGTGACGGCCGCGCCCGCAAGCTCTCCTTCACCGGCTCGACC
GGGGTCGGCCGCAAGCTGCTCGAACAGTGCGCCGACAAGATCCTGCGGACGTCGATGGAGCTGGGCGGCAACGCGCCGTT
CCTGGTCTTCGACGACGCGGACATGGACGCGGCCATCGAGGGCGCCATGCAGGCGAAGATGCGCAACATCGGCGAGGCGT
GCACCGCGGCGAACCGGTTCTACGTGCAGCGCGGCGTCGTCGACGAGTTCGCGCGGCGGCTGACCGAACGCATGCAGGCG
CTGCCGATGGGCCGCGGCACCGAGAAGGACGTCGTCGTCGGCCCGCTGATCGACGAGAAGGCCGTCGACAAGGTGACCGA
GCTGGTCAAGGACGCCACCGACCGCGGCGCTCGGATCCTCACCGGCGGCTCGGGCGTCGACGGGCCGGGGCACTTCTACC
CGGCCACGGTGCTCACCGACGTCCCGCAGGAGGCGCGGCTGACGCACGAGGAGATCTTCGGGCCGGTCGCCCCGATCACG
CCGTTCGACACCGAAGAAGAGGCGGTGGCGAAGGCGAACGACACCGAGTTCGGGCTCGTTTCCTACCTCTTCACCAGCGA
CCTCAAGCGCGCCCTGCGGGTTTCGGAAGCGCTGGAAGCCGGGATGATCGGGCTCAACCAGGGCATCGTCTCGAACCCGG
CGGCGCCGTTCGGCGGGATCAAGCAGTCCGGGCTCGGCCGCGAAGGCGGCTCGGTCGGCATCGACGAGTTCCTGGAGACC
AAGTACATCGCGGTCGCCCTGTGA

Protein sequence :
MSANTESGVVEAVGKELFIGGKWVAAQDGKTFPVVDPATGKELCHVADASPSDGVAALDAAVAAQTEFAKMAPRERGEIL
RRAYELLMRRQEELALLMTLEMGKPLAESKGEIAYAAEFFRWFAEEAVRIDGGYATAPNGAGRFLITKQPVGPTLLITPW
NFPMAMGTRKIGPAIAAGCTAVIKPAAQTPLSMLALAGILAEAGLPEGVLNVVTTSDSGGVMEPLIRDGRARKLSFTGST
GVGRKLLEQCADKILRTSMELGGNAPFLVFDDADMDAAIEGAMQAKMRNIGEACTAANRFYVQRGVVDEFARRLTERMQA
LPMGRGTEKDVVVGPLIDEKAVDKVTELVKDATDRGARILTGGSGVDGPGHFYPATVLTDVPQEARLTHEEIFGPVAPIT
PFDTEEEAVAKANDTEFGLVSYLFTSDLKRALRVSEALEAGMIGLNQGIVSNPAAPFGGIKQSGLGREGGSVGIDEFLET
KYIAVAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 8e-97 50
cur_1509 YP_001800903.1 NAD-dependent aldehyde dehydrogenase Not tested Not named Protein 6e-92 44