Gene Information

Name : AMED_6533 (AMED_6533)
Accession : YP_003768666.1
Strain : Amycolatopsis mediterranei U32
Genome accession: NC_014318
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7218108 - 7218878 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
GTGAAACTCGTCTTCGACGGCGTCACCGCCGGCTATGCGGACGTACCCGCGGTGCACGACGTGACCCTGACGATCGCGAA
GGGCGAGTTCGTGGCGGTGGTCGGCCCGAACGGCAGCGGGAAGTCCACTCTGCTCAAGACGGTCTACCGGGCGCTGCGCC
CACGGACGGGCGCGGTGCTGCTCGGTGCCGAGGACGTCTGGACGGTCAAGCACCGCCAGGTCGCCCGCCGCGTCGGCGTG
CTGGGCCAGGACCAGGCCGGCGGGTACGACTTCACCGCGCGGGAGGCGGTCCGGCTCGGGCGGTACCCGCACCTCGGCGC
GTTCGACCGGCTTTCGGCGGCGGACGAGAAGGTCGTCACCGAAGCGCTGGAACGCACCGGCGCCGGCGAGTTCGCGGACC
GGCCACTGTCCACATTGTCCGGCGGAGAACGGCAGCGGGTGCTGCTGGCCAGAGCCCTGGCACAGCAACCCGAAGTGCTG
GTGCTGGACGAACCCACCAACCACCTCGACCCCGCGCACCAGATCTCCGCACTGGGCCTGGTCGCCTCGCTCGGCGTCAC
CGTCGTGGCGGCCCTGCACACGCTGGACCTCGCCGCCCGGCACGCCACGACGATCGTCGCCCTGAAGGCGGGCACGATCG
CCGCGGCCGGGCCACCGGCCGAAGTGCTCACGCGCGAAATCTTCCGCGAGGTTTTCGCGGTGGACGGGAGCGTGATTCCC
GACCCGGTCGACGGGCGGCCCCGCGTGCTGCTCCGCGAACTGTCCGGCTGA

Protein sequence : 
MKLVFDGVTAGYADVPAVHDVTLTIAKGEFVAVVGPNGSGKSTLLKTVYRALRPRTGAVLLGAEDVWTVKHRQVARRVGV
LGQDQAGGYDFTAREAVRLGRYPHLGAFDRLSAADEKVVTEALERTGAGEFADRPLSTLSGGERQRVLLARALAQQPEVL
VLDEPTNHLDPAHQISALGLVASLGVTVVAALHTLDLAARHATTIVALKAGTIAAAGPPAEVLTREIFREVFAVDGSVIP
DPVDGRPRVLLRELSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-44 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 5e-39 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-27 41
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-27 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 4e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMED_6533 YP_003768666.1 iron ABC transporter ATPase BAC0164 Protein 5e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMED_6533 YP_003768666.1 iron ABC transporter ATPase VFG1042 Protein 5e-44 42
AMED_6533 YP_003768666.1 iron ABC transporter ATPase VFG0925 Protein 3e-42 42