Gene Information

Name : AMED_0490 (AMED_0490)
Accession : YP_003762713.1
Strain : Amycolatopsis mediterranei U32
Genome accession: NC_014318
Putative virulence/resistance : Resistance
Product : peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 493450 - 494154 bp
Length : 705 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCCGGTGATCGCGGTCTCCGGACTGCGCAAGACCTACGGGGCCGGGGAGACGGCGGTGCACGCGCTGCGCGGCGT
CGACCTCACCGTGTGGCCCGGCGAGTACGTCGCGATCATGGGCGCGTCCGGCTCCGGCAAGTCGACGCTGCTGAACATGC
TGGGCTGCCTGGACGTGCCGACGTCCGGCCAGTACCTGCTCGACGGCTTCGGTGTCGGCAAGCTGAACGAACGGCAGTTG
TCGTTGCTGCGCAACCGGAAGATCGGGTTCATCTTCCAGTCGTTCAACCTGGTGCCCCGGACGTCGGCTTTGTCCAATGT
GGAACTACCGCTTGTCTACAGTGGACTACGCCGGTCCGAGCGTCGCCGCCGTGCCCTCGCGGCGCTGGAGATGGTCGGGC
TCTCCGACCGGGCCAAGCACCTCCCGAGCGAGCTCTCCGGCGGCCAGATCCAGCGCGTCGCGGTGGCGCGGGCGCTGGTC
ACCGGCCCGGCGATGCTGCTGGCCGACGAGCCGACCGGCAACCTCGACCGGCGCAGCACCGAGGACGTCCTCGGCGTGTT
CGACCGGCTCAACCGGCTCGGCCGCACCATCGTCGTCATCACGCACGAGGACGAGGTCGCCGCACACGCGCACCGCGTGG
TCCGGGTCGACGACGGCCTGATCGTGTCGGACGAGGTCACGCGCGCGGTGGGGGCGGTCTCGTGA

Protein sequence : 
MNPVIAVSGLRKTYGAGETAVHALRGVDLTVWPGEYVAIMGASGSGKSTLLNMLGCLDVPTSGQYLLDGFGVGKLNERQL
SLLRNRKIGFIFQSFNLVPRTSALSNVELPLVYSGLRRSERRRRALAALEMVGLSDRAKHLPSELSGGQIQRVAVARALV
TGPAMLLADEPTGNLDRRSTEDVLGVFDRLNRLGRTIVVITHEDEVAAHAHRVVRVDDGLIVSDEVTRAVGAVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-27 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-27 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-27 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMED_0490 YP_003762713.1 peptide ABC transporter ATPase NC_008702.1.4606598. Protein 3e-38 53
AMED_0490 YP_003762713.1 peptide ABC transporter ATPase NC_012469.1.7686878. Protein 7e-46 50
AMED_0490 YP_003762713.1 peptide ABC transporter ATPase CP001581.1.gene798.p Protein 1e-36 47
AMED_0490 YP_003762713.1 peptide ABC transporter ATPase CP001581.1.gene598.p Protein 3e-34 44