Gene Information

Name : AMED_4027 (AMED_4027)
Accession : YP_003766206.1
Strain : Amycolatopsis mediterranei U32
Genome accession: NC_014318
Putative virulence/resistance : Resistance
Product : peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4400508 - 4401302 bp
Length : 795 bp
Strand : +
Note : -

DNA sequence :
ATGTACCAGCAAGGCGACACGGTCGAAGTCGTGCGGCTGCTGTCCGTACGCAAGGCGTACGGCAAGGACCGGGCCCAGGT
GCTGGCCCTGGACAACGTGACGGCGGGCTTCGCCGGCGGCACGTTCACCGCGGTGATGGGGCCGTCGGGGTCGGGCAAGA
GCACACTGCTGCACTGCGCGGCCGGCCTGGACAAGCCGACGTCCGGCTCGGTCGTGCTGGGCGGCACCGACCTCAGCGTG
ATGCGCGAGGTCGAGCTGACCCGGTTGCGGCGCGACCGGATCGGGTTCGTGTTCCAGGCCTTCAACCTGCTGCCCGCGCT
CGACGTCGAGCAGAACGTGACCCTGCCGCTGCGGCTGGCGGGACGGCGCCCGGACCCGGCGCTCGTGCGCCGCGTCATCG
AACAGGTCGGGCTCGGCCAGCGGCGGCGCCACCGGCCCGCGGAACTCTCCGGCGGCCAGCAGCAGCGGGTGGCGATCGCC
CGCGCCCTCGTCACCCACCCCGAGGTGATCTTCGCCGACGAGCCGACCGGCGCGCTGGACACGCGGTCGGCCCAGGAAGT
CCTTTCCCTGCTGCGGGAAGCGAAGAGCGTGTCCCGGCAGACCATCGTGATGGTGACCCACGACCCGGTGGCCGCCTCCT
ACGCCGACCGCGTGCTGTTCCTCGCCGACGGCCGGGTCGTCGACGAGCTGCGGCAGCCGAACCCCGAAGAGGTGGCCCGG
CGGATGACCAACCTCGTCGCCCGCGCCGAGCAGCGGCCGCAGGAAGGCCCCTGGCTGAGCGAGCTGACGCGCTGA

Protein sequence :
MYQQGDTVEVVRLLSVRKAYGKDRAQVLALDNVTAGFAGGTFTAVMGPSGSGKSTLLHCAAGLDKPTSGSVVLGGTDLSV
MREVELTRLRRDRIGFVFQAFNLLPALDVEQNVTLPLRLAGRRPDPALVRRVIEQVGLGQRRRHRPAELSGGQQQRVAIA
RALVTHPEVIFADEPTGALDTRSAQEVLSLLREAKSVSRQTIVMVTHDPVAASYADRVLFLADGRVVDELRQPNPEEVAR
RMTNLVARAEQRPQEGPWLSELTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-41 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-41 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-41 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMED_4027 YP_003766206.1 peptide ABC transporter ATPase CP001581.1.gene798.p Protein 5e-44 49
AMED_4027 YP_003766206.1 peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-46 47
AMED_4027 YP_003766206.1 peptide ABC transporter ATPase NC_008702.1.4606598. Protein 3e-38 45
AMED_4027 YP_003766206.1 peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-41 43