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Name : lysS (AMED_1210) Accession : YP_003763427.1 Strain : Amycolatopsis mediterranei U32 Genome accession: NC_014318 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1277702 - 1281025 bp Length : 3324 bp Strand : + Note : - DNA sequence : ATGGGAAACCTCGCGAGCTCGCGCCCTCGCCTCCCCGCCTGGAAGGCGAAGGCGGGCGGCATCGCCGCGACCGTGGTCCA GCTGGCCGCGGTGTTCTCCGTGATCCTGCTCTTCACCGGCGGCCCGCACGGCCGCGTGCTCAACGGCATCGACATGGCCT TCTCCGGCTTGAGCGTGCCGACCAGCGAGAGCCTGATCATGGTGCTGCTGCTGGTGGTGCTCGGAGCCGCCCTGCGCCGC CGCAAGAAGGCCGCGCTGTACACCCTGGTGCTGTTCCAGGTCGGCGGGCTGCTGCTCACGCTGGCCCTCCAGGCGACCCT GCTCTGGTCACCCGACGTGCTGACCCTCGGCCCGAAGCAGGTCCGGCACATCCCCGCGCAGCTGTGGGTGCTGACCATCG CCGACGCCGTCTCGGTCGGGCTGATCGTGCTCCTGCTCGCGCTGCGCCCGGCGTTCCCGGCCCGCCTCGCGCCGAGCGCC TGGCGCGACGGCCTGAGCATGCTGTTCGGCGGCATCGCCGTGGTCATCCTGGTCGGGTGGGGCCTGACCGAGGCGTTCCC CGGCCACCTCGGCGACACGTGGGAGCGCTTCGCCTGGGTCGTCAACCACGCCACGGGCGAGAACCTGCAGCTGCGCCGGA TCGGCGTGGGCGAAGGGCCCGGCTGGCTGGACCTGTTCCTCGACCTCAGCGCGACGGCGGTCGCCACCGCGGCGCTGTAC CTGCTCTTCCGCGGCGTGCGCAGCCGCGCCCTGCGGACCGACGAGGACGAGCTCCGCCTGCGCCGGCTGCTCGCCGAACA CGGCGAGGACGACTCCCTCGGCTACTTCGCCACCCGGCGCGACAAGAGCGTCGTCTTCGCGCCGAACGGCCGCGCGGCGG TGACCTACCGCGTCCTCGGCGGCACGAGCGTCGCCAGCGCCGACCCGGTCGGCGACCCGGAGGCGTGGCCCGACGCGGTC CGGGCGTGGCTCGACGAGACGCGCACGTACGGCTGGACCCCGGGCGTGCTCGGGGCGAGCGAACGCGGCGCGAAGGCGTA CACCGGGGCGGGTCTGCGTGCCCTGGAAATCGGCGACGAAGCGGTGCTCGACGTCCGCGAGTTCAGCCTGGCCGGCCCGG AGCGGCGCTCGGTGCGCCAGGCCGTCAAGCGCATCGAGCGGGCCGGCTACACCTCGCGGGTCCGCCGCCACGGCGAGATC CCCGAGGCCGAGATGACCGAGCTGCTCGCCCGGGCGCAGGCCTGGCGCGGCGCCGAGACCGAACGCGGGTTCTCGATGGC GCTGGGCCGGCTCGGCGACGCCAGCGACGGCCGCAGCGTGATGGTCGAGGCCTACGACGCCCACGGCGAGCTGCGCGGGC TGCTGTCGTTCGTCCCGTGGGGGCGCCGCGGGCTTTCGCTGGACCTCATGCGCCGCGACCGCGACGCCGAGAACGGCCTC AACGAGTACATGATCGCCGAGACGGTCGCGGCCGCGCAGGTCCTCGGCGCGCAGCGGATCTCGCTCAACTTCGCGATGTT CCGCGCGGTGTTCTCCGAGGGCGAGCGGATCGGCGCCGGCCCGGTGCTGCGGGCCTGGCGTGGCATCCTCAGCGTGTTTT CGCGGTTCTTCCAGCTGGAGTCGCTGTACCGGTCCAACGCCAAGTACGGGCCGGACTGGGAGCCGCGGTTCCTCTGCTAC TCCTCGGCCCGGCGGCTGCCGCGGGTCGGCATCGTCGCGGGCGCGCTCGAAGGGTTCGTCCCGACCGGACGGGCGCGGTC GCTGCGGCTGGAGACGGTCAGCGAGGACTTCGTCGCGCGCGTCAAGGAGATCGAGGAGTCGGCGGCGGCACCGGCGCCGA AGGCCTGGCGGCGGCCCGAACAGGTCCGCGTCCGCATCGCCAAGCTCGACAAGCTGCGCGAGGCCGGCATCGACCCGTAC CCGGTCGGTTTCCGCCGCGACGACCACATCGGGGACGTCGTGGCGAAGTACGGCGACCTGGCGCCGGACACCACCACCGG GCACCGGGTCCGGATCGCCGGGCGGGTGCTGAACCTGCGCATCCTCGGCGGCCTGTGCTTCGCCCGCGTCAAGGACTTCA GCGGCGAGATCCAGCTGATGCTGGAGGCCGGCGAGCTGGACCTGACCCGCTGGCGGACCGGCGTCGACCTCGGCGACCAC GTCGGCGTCAGCGGCCAGGTCGTGACGTCGAAGCGCGGCGAGCTTTCGGTGCTCGTCGACGAGTGGACGGTCACCGCGAA GTGCCTGCACCCGCTGCCCGACAAGCGAAAGGGCCTCACCGACCCGGAGACGCGGGTCCGGCAGCGCTACCTCGACCTGG CGGTCAACCCGGACTCGACGAACATGCTGCGGCTGCGGTCCACCGTGGTCCGCGCGGTGCGCGACCGGCTGCACCACGCC GACTACCTCGAGGTCGAGACGCCGATGCTGCAGACGGTGCACGGCGGCGCCAACGCCCGGCCGTTCGTCACCCACATCAA CGCCTACGACATGCGGATGTACCTGCGGATCGCGCCCGAGCTGTACCTGAAGCGGCTGTGCGTGGCCGGCGTCGAGCGGG TCTTCGAGCTCAACCGCAACTTCCGCAACGAAGGCGTCGACGCGACGCACAACCCCGAGTTCACGATGCTCGAGGCGTAC CAGGCGTACGCGGACTACGACACGATGCGGACGCTGACCCGCGAACTGGTCCAGCACGCGGCCGAAGCGGCGTACGGGGC TCAGGTCGTCCGGCGGCCCGACGCCGACGGGAAGGTCGTCGAGTACGACATCTCCGGCGACTGGCCGGTCGTGCCGGTCC ACGAAGCCGTCTCGGCGAGGTTCGGCGAGGAGATCGACCCGGGGACGCCGGTGGCCGAGCTGCGCCGCCTGTGCGTGGCC GCCGGGGTGCCGGTGGGGGAGGACCCGAGCCACGGCGACCTCGTGCTCAAGGCGTTCGAGCACCTCGTCGAGGGCGCGAC CGTGCTGCCGACGTTCTACACCGACTACCCGACCGACGTCTCGCCGCTGACCCGCCAGCACCGGGTGGACCCGCGGCTGG CCGAACGCTGGGACCTCATCGCGTTCGGGTCGGAGGTCGGCACGGCCTACACCGAGCTGACCGACCCGATCGAGCAGCGG CGGCGGCTGGAAGGGCAGTCGCTGCGCGCGGCCAGCGGTGACGTCGAGGCGATGGAGCTGGACGAAGACTTCTTGCTCGC CTTGGAGCACGGGATGCCGCCGACCGGCGGGCTCGGCCTGGGCGTCGACCGGCTGCTCATGATGCTCACCGGTGCCTCCA TCCGCCAGACGGTCCTGTTCCCCTTCGTCCGACCGCAGGCATAA Protein sequence : MGNLASSRPRLPAWKAKAGGIAATVVQLAAVFSVILLFTGGPHGRVLNGIDMAFSGLSVPTSESLIMVLLLVVLGAALRR RKKAALYTLVLFQVGGLLLTLALQATLLWSPDVLTLGPKQVRHIPAQLWVLTIADAVSVGLIVLLLALRPAFPARLAPSA WRDGLSMLFGGIAVVILVGWGLTEAFPGHLGDTWERFAWVVNHATGENLQLRRIGVGEGPGWLDLFLDLSATAVATAALY LLFRGVRSRALRTDEDELRLRRLLAEHGEDDSLGYFATRRDKSVVFAPNGRAAVTYRVLGGTSVASADPVGDPEAWPDAV RAWLDETRTYGWTPGVLGASERGAKAYTGAGLRALEIGDEAVLDVREFSLAGPERRSVRQAVKRIERAGYTSRVRRHGEI PEAEMTELLARAQAWRGAETERGFSMALGRLGDASDGRSVMVEAYDAHGELRGLLSFVPWGRRGLSLDLMRRDRDAENGL NEYMIAETVAAAQVLGAQRISLNFAMFRAVFSEGERIGAGPVLRAWRGILSVFSRFFQLESLYRSNAKYGPDWEPRFLCY SSARRLPRVGIVAGALEGFVPTGRARSLRLETVSEDFVARVKEIEESAAAPAPKAWRRPEQVRVRIAKLDKLREAGIDPY PVGFRRDDHIGDVVAKYGDLAPDTTTGHRVRIAGRVLNLRILGGLCFARVKDFSGEIQLMLEAGELDLTRWRTGVDLGDH VGVSGQVVTSKRGELSVLVDEWTVTAKCLHPLPDKRKGLTDPETRVRQRYLDLAVNPDSTNMLRLRSTVVRAVRDRLHHA DYLEVETPMLQTVHGGANARPFVTHINAYDMRMYLRIAPELYLKRLCVAGVERVFELNRNFRNEGVDATHNPEFTMLEAY QAYADYDTMRTLTRELVQHAAEAAYGAQVVRRPDADGKVVEYDISGDWPVVPVHEAVSARFGEEIDPGTPVAELRRLCVA AGVPVGEDPSHGDLVLKAFEHLVEGATVLPTFYTDYPTDVSPLTRQHRVDPRLAERWDLIAFGSEVGTAYTELTDPIEQR RRLEGQSLRAASGDVEAMELDEDFLLALEHGMPPTGGLGLGVDRLLMMLTGASIRQTVLFPFVRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-163 | 47 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
