Gene Information

Name : Nwat_0513 (Nwat_0513)
Accession : YP_003759799.1
Strain : Nitrosococcus watsonii C-113
Genome accession: NC_014315
Putative virulence/resistance : Virulence
Product : retinal dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.36
Position : 531518 - 533002 bp
Length : 1485 bp
Strand : -
Note : KEGG: noc:Noc_2605 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase

DNA sequence :
ATGAACCAGCCAGCCCCATTGCCCCTCACCCACAAAGCGCAGGTAGCGGTGCGCCAGACTCGCTTACTGATTGATGGCGA
ATTCCGCAACAGCCTCAGTGGTAAAACCTTTGCTACTGTCGATCCCTCCACCGAAGAAGTGATTGCCCAGGTGGCGGAAG
GCGATGCGGAAGATATTGACCTAGCGGTCCAAGCGGCCCGTAAAGCTTTCGATAGCGGCCCCTGGCGCCAAATGGACGCC
CGAGAACGGGGCCGCCGAATGTTGAAGTGGGCCGATTTGATTGAAGACCATATGGAAGAACTGGCCAAGCTTGAAGTCTT
GGACAATGGGAAGCCCATCAACGAGGCCCTAGGCTACGATATTCCCAGCGCCGCGGCTACGCTTCGTTATTTTGCCGGCT
GGGCGGACAAAATTCATGGCAAGACTATTCCTATTTCCGGGCCTTTCTTCACTTATACGCGCCGGGAGCCAGTGGGAGTT
TGCGGCCTGATCATTCCCTGGAACTTTCCTCTGGCAATGGCGGCTTGGAAGTTAGGTCCTGCCCTGGCCGCTGGCTGCAC
TGCTATTCTGAAACCGGCGGAGCAAACGCCCCTGACGGCCCTTCGCGCCGGTGAGCTGGCCCTGGAGGCAGGCATTCCTC
CAGGTGTGCTCAATATTGTGCCCGGTTTCGGTCCTACGGCGGGCGCGGCCCTAGTACAGCACCCCCTAGTTGAGAAAATC
GCCTTCACGGGAGAATATAAAACCGCCCAAACGATTAAGCAGGCCACGATTAACAGTATGAAACGTCTGTCCTTTGAGCT
AGGAGGTAAAAGCCCCAACATCATCTTTAACGATGCCAATCTGGAAGAAGCTATTACGGGTTCCTTTGGTGCTATTTTTC
TAAATCAAGGACAAAACTGCTGCGCCGGTAGCCGCGCCTTTGTGCATAACAATATTTATGATGAATTCGTGGAGCAATTT
GCCGAGAAGGCAGCCAAACGTAAACTGGGCGATCCCTTCGATCCCGCTACCGAGCATGGAGCTCAAATCGACAAGGCCCA
GTTCGATAAAATTATGCGCTATATCGCCCTTGGCAAGGAGCAAGGCGCAAAATGTGTCACCGGCGGCGAGCGGGCCTTTG
AGCAAGGTTATTTTATCCAACCCACCATCTTTAGGGAGGTCAAGGAGGATATGGCCATCGCAACGGATGAGATTTTCGGG
CCAGTGGCTAGTGTGCTACGCTTCAAAGACATCAATGAAGTTATTGAAAAAGCCAATAATACCCCCTTTGGCCTTGCGGC
GGCCGTATGGACTCAAGACATCGACAAAGCCAATGCGGTGGCCGCAGGGGTAAAAGCCGGGACCGTCTGGGTCAACTGCT
ACAATGTGGTCGATCCAGCAGCGCCTTTTGGCGGCTTTAAACTATCCGGACTCGGCCGGGAGTTGGGTGAACAAGCCCTG
GATGCCTACACGGAAACCAAAACAGTCACTGTATTGCGGAGGTAA

Protein sequence :
MNQPAPLPLTHKAQVAVRQTRLLIDGEFRNSLSGKTFATVDPSTEEVIAQVAEGDAEDIDLAVQAARKAFDSGPWRQMDA
RERGRRMLKWADLIEDHMEELAKLEVLDNGKPINEALGYDIPSAAATLRYFAGWADKIHGKTIPISGPFFTYTRREPVGV
CGLIIPWNFPLAMAAWKLGPALAAGCTAILKPAEQTPLTALRAGELALEAGIPPGVLNIVPGFGPTAGAALVQHPLVEKI
AFTGEYKTAQTIKQATINSMKRLSFELGGKSPNIIFNDANLEEAITGSFGAIFLNQGQNCCAGSRAFVHNNIYDEFVEQF
AEKAAKRKLGDPFDPATEHGAQIDKAQFDKIMRYIALGKEQGAKCVTGGERAFEQGYFIQPTIFREVKEDMAIATDEIFG
PVASVLRFKDINEVIEKANNTPFGLAAAVWTQDIDKANAVAAGVKAGTVWVNCYNVVDPAAPFGGFKLSGLGRELGEQAL
DAYTETKTVTVLRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island Protein 4e-80 45
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 6e-73 45
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-80 43
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-81 43
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-81 43
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-81 43
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-80 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nwat_0513 YP_003759799.1 retinal dehydrogenase VFG0082 Protein 6e-81 43