Gene Information

Name : Dehly_0279 (Dehly_0279)
Accession : YP_003757923.1
Strain : Dehalogenimonas lykanthroporepellens BL-DC-9
Genome accession: NC_014314
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 266307 - 267167 bp
Length : 861 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: neu:NE0155 integrase catalytic subunit

DNA sequence :
ATGAAAGAACTGCGGCTCAAATATCCAGTCCCTATTCTCCGGCGAATGCTTGGTGTCTCCGGTAGCGGCTTTTATGCCTG
GATGGATAGGCCTTTATCGAAGCGGGGTCAGGAGGAAGCGCGGCTTGAGTTGGAGATCAAGGCAGCGGATAAGCGGACGC
GCCAGACCTATGGGCCGGAGCGACTACAGCGGGATTTGGCAGCGCACGGCGTGAAGGTGGGTATTTGCCGTATCAAGCGT
ATCCGGAAAAAGCTGGGGATACGTTGCAAACAGAAGAGTAAGTTCAAGGTTACCACGGATTCCAGGCACAGGTTGCCGGT
AGCCGGAAACCTGTTGGCGCAGAAGTTTGTGGCCTCCAGGCCGAATGATGTATGGCTCACCGATATCACCTATATTTCCA
CCGATGAAGGTTGGCTGTATCTGGCAGGCCACAAGGACCTGTGGAATGGCGAAATTGTCGGATATGCCATGGGTAAGCGC
TTGACCAGAAACCTGGTCAATGAGTCTTTGCTTCGGGCGGTGGCCGCTAAACATCCGGCCGAGGGGCTGTTGCACCACTC
TGACCGGGGTAGCCAGTATTGCTCCCTTGAGTACCGGCGACTACTGGAACGATTTGGCTTGAGAGCTTCCATGAGCCGGA
AAGGGAACTGCTACGACAACGCACCTATGGAGAGCTTCTGGGGAACGCTAAAACAGGAACTGGTGAATCATCGGCGCTAT
AGAACCAGACAAGAAGCCATCCGGGAGATCACGGAGTATATCGAAATCTTCTACAACCGGCAACGCCGGCAAGCCAGGCT
GGGATTCTTGTCGCCGGCGGCTTATGCTCAACAATTCTACGCAGGACTGGTGGCGGCATGA

Protein sequence :
MKELRLKYPVPILRRMLGVSGSGFYAWMDRPLSKRGQEEARLELEIKAADKRTRQTYGPERLQRDLAAHGVKVGICRIKR
IRKKLGIRCKQKSKFKVTTDSRHRLPVAGNLLAQKFVASRPNDVWLTDITYISTDEGWLYLAGHKDLWNGEIVGYAMGKR
LTRNLVNESLLRAVAAKHPAEGLLHHSDRGSQYCSLEYRRLLERFGLRASMSRKGNCYDNAPMESFWGTLKQELVNHRRY
RTRQEAIREITEYIEIFYNRQRRQARLGFLSPAAYAQQFYAGLVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-72 59
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-72 59
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-71 58
unnamed AAF09030.1 unknown Not tested SHI-O Protein 6e-72 58
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-72 58
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 6e-72 58
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 6e-72 58
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-72 58
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-71 57
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-39 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-39 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dehly_0279 YP_003757923.1 integrase catalytic subunit VFG1706 Protein 3e-72 58