Gene Information

Name : Hden_3204 (Hden_3204)
Accession : YP_003757320.1
Strain : Hyphomicrobium denitrificans ATCC 51888
Genome accession: NC_014313
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3275559 - 3276236 bp
Length : 678 bp
Strand : -
Note : KEGG: mlo:mlr4457 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator

DNA sequence :
ATGCGAATCTTGCTGCTTGAAGACGATGCCAATACAGCCGCCTACGTCTCGAAGGGCCTCGAGGAAGAAGGGCATACCGT
CGATCATTTGGCAGACGGTCGCGATGCGGTTGCTCAAGCCGTCGGCGAGACCTACGACGTCGTCATTCTCGATCGCATGC
TTCCCGGGCTCGATGGTCTGGCGATCATTAAGGAGATCCGCAGCGCCGGACGCCGCGTGCCAGTGCTGTTCCTGACGGCG
CTTGGCGGCGTCGACGATCGCGTCGAAGGTCTCGATGCGGGTGGCGACGACTATCTCGTCAAGCCATTCGCATTCTCGGA
ATTACTCGCACGCGTGAACGCGCTCGCACGCCGCCCCCACACCATCGGCGAGGAAACTCGGCTCAAGGTTGGCGATCTGG
AGATCGATCTCGTCAGCCGCAAGGTCACGCGCGGCGGCGACACGATCGACCTTCAGCCACGTGAGTTCCGGCTGCTTGAA
GTTCTCATGCGCAACCGCGGCCGCGTCGTGACGCGCACGATGCTGCTCGAGCGCGTGTGGAGCTTCCACTTCGATCCGAA
GACGAGCGTCGTCGAAACCCACATCTCGCGCCTGCGCGCGAAAATCGACAAGCCCTACGATACGGAGCTAATCCATACGA
TCCGCGGCTGCGGCTATACCGTGAACGATGGTGCCTGA

Protein sequence :
MRILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAVGETYDVVILDRMLPGLDGLAIIKEIRSAGRRVPVLFLTA
LGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPHTIGEETRLKVGDLEIDLVSRKVTRGGDTIDLQPREFRLLE
VLMRNRGRVVTRTMLLERVWSFHFDPKTSVVETHISRLRAKIDKPYDTELIHTIRGCGYTVNDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-45 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-44 45
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-33 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0083 Protein 6e-58 53
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0125 Protein 7e-53 52
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-53 51
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-49 49
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-51 49
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0111 Protein 5e-54 46
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-48 45
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 7e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-45 46
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator VFG1390 Protein 7e-40 42
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator VFG1563 Protein 4e-33 42
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator VFG1702 Protein 6e-34 42
Hden_3204 YP_003757320.1 winged helix family two component transcriptional regulator VFG1389 Protein 5e-35 41