Gene Information

Name : Hden_3095 (Hden_3095)
Accession : YP_003757211.1
Strain : Hyphomicrobium denitrificans ATCC 51888
Genome accession: NC_014313
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3160587 - 3161330 bp
Length : 744 bp
Strand : -
Note : KEGG: bja:bll6867 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence :
ATGAGCAAGCGACTGTTCCTGCTGGCGCTCATTCTCTTGGCCGTGATGCCGACGGCGGCGCTCGCCCAGACCATCGACCT
CAACACGCTGTTCCCGGCGGGCGACGCATCGGTCTCCGGACGTATCGTGCAGTTGCTGGTCGTGATGACCGTGCTGTCGG
TTGCGCCCGGTCTGCTGATGATGGTGACGTCGTTCGCACGGTTCGTGATCGCGCTGTCATTCCTCCGCTCGGGCCTCGGG
CTTCAGACGACGCCGAGCAATATGATTCTGGTCAGCCTTGCGCTGTTCATGACCATGTTCGTCATGGCGCCGACGTTCCA
GGCGGCCTGGGACAACGGCGTCAAGCCGATGGTCGAGAACAAGATCAGCCAGGAAGAGGGCTACCAGCGGACGACCGAGC
CGTTCCGCGCCTTCATGAAGGCGAACGTCCGCGAAAAGGACATCGCAATTTTTCAGGACCTGTCGGCAGAGCGCTTCGGC
GAGGCGAACAAAGCCGGCCCCGACGACCTTCGCGTCCTCATCCCGGCGTTCATGGTCTCGGAGCTTCGCCGCGGCTTCGA
AATCGGCTTCCTGGTGACGCTGCCGTTTCTGGTCATCGATCTTGTGGTGGCAACGATCATGACGTCGATGGGCATGATGA
TGATGCCGCCCACTGTGGTGTCGCTACCACTCAAGATATTGTTCTTCGTTCTTGTCGACGGCTGGAGCTTGCTCGTCGGA
GCGCTCGTCAAATCCTTCATATAA

Protein sequence :
MSKRLFLLALILLAVMPTAALAQTIDLNTLFPAGDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSFLRSGLG
LQTTPSNMILVSLALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEPFRAFMKANVREKDIAIFQDLSAERFG
EANKAGPDDLRVLIPAFMVSELRRGFEIGFLVTLPFLVIDLVVATIMTSMGMMMMPPTVVSLPLKILFFVLVDGWSLLVG
ALVKSFI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-24 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-24 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hden_3095 YP_003757211.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-40 49
Hden_3095 YP_003757211.1 flagellar biosynthetic protein FliP VFG1259 Protein 7e-42 47
Hden_3095 YP_003757211.1 flagellar biosynthetic protein FliP VFG2338 Protein 4e-37 46
Hden_3095 YP_003757211.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-38 45