Gene Information

Name : Hden_1134 (Hden_1134)
Accession : YP_003755269.1
Strain : Hyphomicrobium denitrificans ATCC 51888
Genome accession: NC_014313
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1181735 - 1182523 bp
Length : 789 bp
Strand : +
Note : KEGG: rpd:RPD_2012 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein

DNA sequence : 
ATGGCAAGCTCGGGCAGCCCCGTCAACCACACGACGGGGCTGCCTCGACGTTTGGACGCCGCCCAGCTAAACAGTAGTTC
GAGAGACGGCCAGGATCAGAAAAACGCCATGCGCGTGCTCGTAATCGAAGACGACAGGGAAACGGCGCAGTTCCTTCAGA
AGTCTTTGAAAGAGAATGGGCACACAGCCGATCTCGCCGGTGACGGCGAAGCGGGATTGGCGCTTGCGACGGACGGCGCC
TACGACGTTCTGATCGTCGACCGCATGCTGCCGCTTCTCGACGGACTCTCGGTCATCAAGTCTTTGCGCGCCGAGGGCAA
CCGCACGCCGGTTCTCATTCTTTCGGCGCTTGGCGAAGTCGACGATCGCGTCAAAGGTCTGCGCGCTGGCGGCGACGATT
ATCTGACGAAGCCCTACGCCTATTCCGAATTGCTGGCACGCGTCGAGGCGCTTGGACGGCGCACGGCACCGGAAGAGCAG
CAGACGCGCATCTCGGTCGGCGATCTTGTCCTCGACAGGCTGTCCCATCGCGTGACGCGCAGCGGCGAGCACATTCTTCT
GCAGCCGCGCGAATATCGCCTGCTCGAATACCTGATGCAGCACGCGGGGCAGGTCGTGACGCGCACGATGCTGCTCGAGC
ATGTCTGGGACTATCACTTCGATCCGCAGACGAACGTCATCGACGTGCATGTCTCGCGCCTGCGCGCCAAGATCGACAAG
AATTTCGACAAGCCGCTGCTGCATACGGTTCGGGGCGCAGGATATACGATCCGTGACGGCCCTACTTGA

Protein sequence : 
MASSGSPVNHTTGLPRRLDAAQLNSSSRDGQDQKNAMRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGA
YDVLIVDRMLPLLDGLSVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAPEEQ
QTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWDYHFDPQTNVIDVHVSRLRAKIDK
NFDKPLLHTVRGAGYTIRDGPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-38 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-47 49
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-45 48
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-44 48
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0638 Protein 3e-39 48
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0111 Protein 5e-49 47
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0347 Protein 3e-44 45
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-39 43
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 4e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-38 43
Hden_1134 YP_003755269.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-38 43