|
Name : gspE (RPSI07_0372) Accession : YP_003751056.1 Strain : Ralstonia solanacearum PSI07 Genome accession: NC_014311 Putative virulence/resistance : Virulence Product : General Secretory Pathway protein E, type II secretion system Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 362014 - 363570 bp Length : 1557 bp Strand : - Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 10419967, 2124971; Product type t : transporter DNA sequence : ATGGCAACGCAAGCTCCCACCTCTGACGCGCGCACGCTCGAGCCGCCCTCGCCCTCGGCGGTGCGGCTGGTGCCGTATGT GTTTGCGCGCGACGCCAGGCTGCTGGTCGCGCGGCAGGATGTCGACACGCTCGAGGTGTGGGTCTGCCCCGAGACCTCGC GCACTGCGCTGGCCGAGCTGGCCCGCGTGTTCGGCGCGCTGCGGCTGGTGAGCCTGGACGCCGCCGCGCTCTCCACCGCC ACGCAGACGGCCTACAACGCCCAGGACGGCAGCGCCGCCCAGGTGGTCGGCGAAGTGGAAGGCGAGGTGGACCTGTCGCG CCTGATGCAGGACATCCCCGCCGTGGAAGACCTGCTCGAATCGGAAGACGATGCGCCGATCATCCGCATGATCAACGCAC TGCTCACGCAGGCCGCGCGCGAAGGCGCCTCGGACATCCACATCGAGCCGTTCGAGAACGCCTCGGTGGTGCGCTTCCGC GTGGACGGCACGCTGCGCGACGTGGTGCGCCCGAAGAAGGCGCTGCACGGCGCGCTGATCTCGCGCATCAAGATCATGGC GCAGCTCGACATCGCCGAGAAACGCCTGCCGCAGGACGGCCGCATCACGCTGCGCGTGGGCGGGCGGCCGGTGGACGTGC GCGTCTCCACCCTGCCCACCGGCCACGGCGAGCGCGCGGTGCTGCGTCTGCTCGACAAGGAAGCCGGCCGGCTGGACCTC GGCAAGCTCGGCATGGGCGCCGGCACCCTGGCGCGCTTCGACCACCTGATCAACCAGCCGCACGGCATCGTGCTCGTCAC CGGCCCGACCGGTTCGGGCAAGACCACCACGCTGTATGCCGCGCTGTCACGGCTGGATGCTGCCTCCACCAACATCATGA CGGTGGAAGACCCGATCGAGTATGACCTGGACGGCATCGGCCAGACCCAGGTCAACCCGAAGATCGACATGACCTTCGCC AAGGCCCTGCGCGCCATCCTGCGGCAGGACCCGGACGTGGTCATGATCGGCGAGATCCGCGACCTGGAGACCGCGCAGAT CGCCGTGCAGGCCTCGCTGACCGGCCACCTGGTGCTGGCGACGCTGCACACCAACGATTCGGCCTCGGCGGTGACGCGGC TGATCGACATGGGGATCGAGCCGTTCCTGCTGTCGTCGTCGCTGCTGGGTGTGCTGGCGCAGCGGCTGGTGCGGCGCCTG TGCGTGCACTGCCGCCGCGAGGAAGTGCTGGAACTCACGCCCACCGAGATCGAGGCCGTGGCCGGCACGCCGCCCGTGGA CGGCGTCACCTCCGCCGTGCCGACGCGACGCTCGGTGTGGCACCACGTCGGCTGCGAGCACTGCGGCCATTCGGGCTACC AGGGCCGGACCGGCGTGTATGAGCTGCTGACGGTGACGTCCGAGATCCAGACCATGATCCACCGCCAAGCGCCCGAGTCC GAGATCAAGGCGCTCGCCATCGGCCAGGGCATGCACACCATGCGCGCGGATGCGCAGCGGTGGCTGGACGCGGGCGCGAC GTCGCTGGAAGAAGTGCTGCGCGTGACGCGTGATTGA Protein sequence : MATQAPTSDARTLEPPSPSAVRLVPYVFARDARLLVARQDVDTLEVWVCPETSRTALAELARVFGALRLVSLDAAALSTA TQTAYNAQDGSAAQVVGEVEGEVDLSRLMQDIPAVEDLLESEDDAPIIRMINALLTQAAREGASDIHIEPFENASVVRFR VDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLDKEAGRLDL GKLGMGAGTLARFDHLINQPHGIVLVTGPTGSGKTTTLYAALSRLDAASTNIMTVEDPIEYDLDGIGQTQVNPKIDMTFA KALRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVLATLHTNDSASAVTRLIDMGIEPFLLSSSLLGVLAQRLVRRL CVHCRREEVLELTPTEIEAVAGTPPVDGVTSAVPTRRSVWHHVGCEHCGHSGYQGRTGVYELLTVTSEIQTMIHRQAPES EIKALAIGQGMHTMRADAQRWLDAGATSLEEVLRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-106 | 52 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-106 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG0182 | Protein | 2e-116 | 54 |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG1876 | Protein | 7e-109 | 52 |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG2048 | Protein | 5e-106 | 50 |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG0233 | Protein | 4e-78 | 46 |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG0112 | Protein | 1e-75 | 44 |
| gspE | YP_003751056.1 | General Secretory Pathway protein E, type II secretion system | VFG2426 | Protein | 6e-68 | 43 |
